BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0123.p
         (570 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313748|ref|YP_003777840.1| hemagglutinin-related protein [...   231   9e-62

>gi|300313748|ref|YP_003777840.1| hemagglutinin-related protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1113

 Score =  231 bits (590), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 199/375 (53%), Gaps = 27/375 (7%)

Query: 142  TVSYTLTNASGTSAAATVNITVAARTNAANDVQVKGLVAAHSQSASRFATAQLGNFSRRL 201
            TV   +T ASGT   A    + A   + A+   V  +V A +Q+  RFATA L NF++RL
Sbjct: 695  TVDLVVTAASGTVTVAG-GFSYATLADPASSTAVSAMVRAQTQAVQRFATAHLANFTQRL 753

Query: 202  ESLHGTGWAQSSFGLGFAQPAAPVKPL--------LAQWNEDEIDRVVGSPLQAGMRKVG 253
            E+LHG G A SSFGL F Q   P +          +  + + E+     + L+AG+R   
Sbjct: 754  EALHGEGAAPSSFGLSFGQTNDPRREPSTWARGGDIVNYRDSEL-----AYLRAGLRNTA 808

Query: 254  WPLLSQAGKPAAKSAAAAADGNGLAALPELPAKPEQ-TRQELSLWIAGTVDFGQRNANGQ 312
                S A    A              LPELP   E  +R +++ WI+G +D   +  +  
Sbjct: 809  LAASSTASTSGADDQ-----------LPELPQVSEAVSRGDIAWWISGALDLVNQKDSAG 857

Query: 313  QEGFRFTTNGVSMGADYRLSDQITIGAGTGYSRDRSDIGENGSKSIGQSVVATVYGSLRP 372
            Q   R  T+GVS+G DYR+S  +T+G G GYS       ++ + S  Q V+  +Y S RP
Sbjct: 858  QSSARLATSGVSVGGDYRISRTLTLGMGAGYSLSTYRADDDSASSRSQGVMGVLYASTRP 917

Query: 373  TPNIFIDGMFGYGALNFDSTRYVTDDGSFATGQRGGKQLFVALSSGYEFRGDSWMWSPYG 432
              ++++D + GYG L FD +RY+ D G  A G R G+Q+F + + GYE+RG  W+ SPY 
Sbjct: 918  ADDLYVDVLAGYGVLRFDLSRYIADTGVLAAGSRTGRQVFASTTMGYEWRGQDWLVSPYV 977

Query: 433  KVDLTSTTLAQYTEAAAGNNALTYFKQRVRTSSGTFGLRTEGRYLSRFGMWTPRARLEYR 492
            ++DL   TL +Y+E + G  AL+YF Q +R  +   G+R +       G+ TP+AR+ Y+
Sbjct: 978  RLDLARATLDRYSE-SGGAGALSYFSQSLRNDAAYLGMRAQFDVTLPVGLLTPQARVAYQ 1036

Query: 493  RQFSGAGEAGISYAD 507
            R    AG A + YAD
Sbjct: 1037 RSLQAAGTATMRYAD 1051


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,718,826
Number of extensions: 73753
Number of successful extensions: 328
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 480
Effective length of database: 1,193,720
Effective search space: 572985600
Effective search space used: 572985600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)