BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0086.p (135 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313708|ref|YP_003777800.1| AsnC family transcription regul... 188 1e-49 gi|300312760|ref|YP_003776852.1| transcription regulator protein... 95 2e-21 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 63 1e-11 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 57 4e-10 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 54 3e-09 >gi|300313708|ref|YP_003777800.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 188 bits (478), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/154 (63%), Positives = 113/154 (73%), Gaps = 19/154 (12%) Query: 1 MTINLDELDRRILNALQENAAQTNFQLAEHVHASPPTCXQL------------------A 42 MT LD+LDRRIL ALQ +A+QTN +LA VHASPPTC + A Sbjct: 1 MTFELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDA 60 Query: 43 EHVHAS-TAIVEITLDRQGDEEQVEFEALMAAEPAVLQCYRVSPGPDFVLMVQVADMPAY 101 + V A+ TA+VEITLDRQG+EEQ FEAL+A EPAV QCYRVSPGPDFVL+V V DM +Y Sbjct: 61 QKVAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMSSY 120 Query: 102 HGLAHRLFATHQNVRNVRSYFSIHRSKFETRIAV 135 H LAHRLFA+ +NVRNVRSYFSIHRSKFET I + Sbjct: 121 HALAHRLFASQRNVRNVRSYFSIHRSKFETAIPI 154 >gi|300312760|ref|YP_003776852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 19/150 (12%) Query: 4 NLDELDRRILNALQENAAQTNFQLAEHVHASPPTCXQLAEHV------------------ 45 LD++DR++LN LQ++ + LAE +H S PTC + + Sbjct: 7 TLDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRDLREAGIISAEVAMVDPFAL 66 Query: 46 -HASTAIVEITLDRQGDEEQVEFEALMAAEPAVLQCYRVSPGPDFVLMVQVADMPAYHGL 104 + A +EI+L+ Q D+ +FE MA E V+QCY VS D+ L V V DM AY+ Sbjct: 67 GYGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQF 126 Query: 105 AHRLFATHQNVRNVRSYFSIHRSKFETRIA 134 R+ + NVR+ +S F + R+KF TRIA Sbjct: 127 VRRVISGSGNVRHFQSRFPMKRAKFTTRIA 156 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 62.8 bits (151), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 19/148 (12%) Query: 3 INLDELDRRILNALQENAAQTNFQLAEHVHASPPTCXQLAEHVHASTAI----------- 51 + LD D RILN LQEN++ +N +LA ++ SP + + + I Sbjct: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 Query: 52 --------VEITLDRQGDEEQVEFEALMAAEPAVLQCYRVSPGPDFVLMVQVADMPAYHG 103 V++ L+RQG E +FE ++A V++ Y ++ D++L + V D+ Sbjct: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 Query: 104 LAHRLFATHQNVRNVRSYFSIHRSKFET 131 ++N+RS F++ + K++T Sbjct: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKT 148 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 57.4 bits (137), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 19/151 (12%) Query: 4 NLDELDRRILNALQENAAQTNFQLAEHVHASPPTCXQLAEHVHASTAI------------ 51 LD++ ++IL LQ + +N LA V+ SP C + + + I Sbjct: 3 GLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELL 62 Query: 52 -------VEITLDRQGDEEQVEFEALMAAEPAVLQCYRVSPGPDFVLMVQVADMPAYHGL 104 +E+ LDR + EF+ + + P +++C+ V+ G D+++ +V DM AY Sbjct: 63 DVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREF 122 Query: 105 AHRLFATHQNVRNVRSYFSIHRSKFETRIAV 135 + + VR +Y + K R+ + Sbjct: 123 LGKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 54.3 bits (129), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%) Query: 3 INLDELDRRILNALQENAAQTNFQLAEHVHASPPTCX---QLAEHVH------------- 46 IN+D D +L LQ + TN L + VH S Q E H Sbjct: 4 INVDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 Query: 47 ---ASTAIVEITLDRQGDEEQVEFEALMAAEPAVLQCYRVSPGPDFVLMVQVADMPAYHG 103 TA +TLDRQG+ FE + P V +C+ V+ D++L + D+ A+ Sbjct: 64 VGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123 Query: 104 LAHRLFATHQNVRNVRSYFSIHRSK 128 V NV+S ++ + K Sbjct: 124 FMMTRLLRLPGVTNVKSNITLKKVK 148 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.132 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 382,480 Number of extensions: 13441 Number of successful extensions: 45 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 5 Length of query: 135 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 59 Effective length of database: 1,260,010 Effective search space: 74340590 Effective search space used: 74340590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 125 (52.8 bits)