BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0084.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313706|ref|YP_003777798.1| UDP-N-acetylglucosamine pyropho...   476   e-135

>gi|300313706|ref|YP_003777798.1| UDP-N-acetylglucosamine
           pyrophosphorylase [Herbaspirillum seropedicae SmR1]
          Length = 452

 Score =  476 bits (1224), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/285 (81%), Positives = 254/285 (89%)

Query: 25  MNIVILAAGMGKRMQSALPKVLHPLAGKSLLGHVVDTAKTLSPTQLCVVYGHGGDAVPSS 84
           MNIVILAAGMGKRMQS+LPKVLHPLAGK LLGHV+DTA+ L+P++LCV+YGHGGDAVP +
Sbjct: 1   MNIVILAAGMGKRMQSSLPKVLHPLAGKPLLGHVIDTARALAPSRLCVIYGHGGDAVPQA 60

Query: 85  FADAGLSFARQEPQLGTGHAVAQALPFLDDDAPTLVLYGDVPLTTPATLQRLMAAAGNDK 144
           FAD  L+FARQEPQLGTGHAV QALP L+D  PTLVLYGDVPLTT A+LQRL+AAAG DK
Sbjct: 61  FADRDLAFARQEPQLGTGHAVMQALPHLEDGVPTLVLYGDVPLTTAASLQRLLAAAGQDK 120

Query: 145 LAVLTITVPDPTGYGRIVREHGKITRIVEQKDASEAERTICEINTGIIAAPTARLRTWLA 204
           L VLT+T+ DPTGYGRIVRE+GKITRIVEQKDAS AER I E+NTGII APTARLR WLA
Sbjct: 121 LGVLTVTLDDPTGYGRIVRENGKITRIVEQKDASPAERAITEVNTGIIVAPTARLRDWLA 180

Query: 205 ALSNDNAQGEYYLTDVIAAAVADGVDVVSANPADVTETLGVNSKVQLAELERAYQRRVAN 264
            LSNDNAQGEYYLTDVIAAAVADGVDVVSA P DV ETLGVNSKVQLAELER +QR +A 
Sbjct: 181 KLSNDNAQGEYYLTDVIAAAVADGVDVVSAQPDDVAETLGVNSKVQLAELERVHQRNIAT 240

Query: 265 ALLEQGVTLLDPARLDVRGTLSCGRDVSIDVNCIFEGKVDIDDGA 309
           ALLE GVTL DPAR+DVRGTL CGRDVSIDVNC+FEG V I +GA
Sbjct: 241 ALLEAGVTLADPARIDVRGTLDCGRDVSIDVNCVFEGCVSIGEGA 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,075,146
Number of extensions: 46360
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)