BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0080.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313705|ref|YP_003777797.1| glycosyltransferase [Herbaspiri...   135   6e-34
gi|300313707|ref|YP_003777799.1| alpha-D-mannose-alpha(1-6)phosp...   120   2e-29

>gi|300313705|ref|YP_003777797.1| glycosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  135 bits (340), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/88 (65%), Positives = 76/88 (86%)

Query: 1   VPVCLSDLETYRHIGLRHGRNAMMHPVGNVEILASNLRLMLASDTLRKSVTKAGKSLLLK 60
           VPVCLSDLETYRHIGL+HG NAMMHP+GN+E+LASNL+++L  D +R+ +T+AGKSLLLK
Sbjct: 262 VPVCLSDLETYRHIGLKHGVNAMMHPMGNMELLASNLQMVLYHDDVRRRITRAGKSLLLK 321

Query: 61  NLASDWTEEFERLVYRTQTESEIKKLGY 88
           NL SDW + FERL+YR Q +  +K++G+
Sbjct: 322 NLTSDWADAFERLIYRVQAQIAVKQMGF 349


>gi|300313707|ref|YP_003777799.1|
           alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol
           monomannoside transferase [Herbaspirillum seropedicae
           SmR1]
          Length = 348

 Score =  120 bits (302), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/88 (60%), Positives = 69/88 (78%)

Query: 1   VPVCLSDLETYRHIGLRHGRNAMMHPVGNVEILASNLRLMLASDTLRKSVTKAGKSLLLK 60
           VPVCLSDLETY HIGL+HGRNA+MHPVG   +L++NL+ +L   TL + + +AGKSLLLK
Sbjct: 261 VPVCLSDLETYGHIGLQHGRNALMHPVGQTAVLSANLQQLLTRPTLARELARAGKSLLLK 320

Query: 61  NLASDWTEEFERLVYRTQTESEIKKLGY 88
           NL  DW +EFER++ R    +E++KLGY
Sbjct: 321 NLTRDWADEFERIIARAAMGAELRKLGY 348


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 234,851
Number of extensions: 6700
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)