BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0037.p
         (89 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313674|ref|YP_003777766.1| hypothetical protein Hsero_4391...   115   7e-28
gi|300310527|ref|YP_003774619.1| transmembrane protein [Herbaspi...   102   4e-24

>gi|300313674|ref|YP_003777766.1| hypothetical protein Hsero_4391
           [Herbaspirillum seropedicae SmR1]
          Length = 102

 Score =  115 bits (288), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 84/89 (94%)

Query: 1   MKTLVKDAQELFREAAAATGDKADELRSKGLTMLEAAVEAAQNAQAVAIEKGKEVAAATD 60
           MKTLVKDAQ LF EAAAATG+KADELR++GLT+LEAA EAAQ+AQA AIEKGKEVAA TD
Sbjct: 14  MKTLVKDAQALFAEAAAATGEKADELRARGLTLLEAAAEAAQSAQAAAIEKGKEVAAKTD 73

Query: 61  DYVHENPWRAVAISAGVGLLVGLVIGRSK 89
           DYVHENPWRAVAISAG+GLLVGLVIGRSK
Sbjct: 74  DYVHENPWRAVAISAGLGLLVGLVIGRSK 102


>gi|300310527|ref|YP_003774619.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  102 bits (255), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 65/88 (73%)

Query: 1   MKTLVKDAQELFREAAAATGDKADELRSKGLTMLEAAVEAAQNAQAVAIEKGKEVAAATD 60
           +++L++ AQ++F EAA ATG KAD+LR+    +LE A+  AQ+AQA  ++ G+++   TD
Sbjct: 53  VQSLLQQAQDMFAEAANATGKKADDLRASAQELLEQALNTAQDAQAAVVDTGRQIVTTTD 112

Query: 61  DYVHENPWRAVAISAGVGLLVGLVIGRS 88
           DYV  NPWRA+AI  G+GLLVGL +GR 
Sbjct: 113 DYVQSNPWRAIAIGTGIGLLVGLAVGRC 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.126    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 172,719
Number of extensions: 3634
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 89
Length of database: 1,619,870
Length adjustment: 59
Effective length of query: 30
Effective length of database: 1,340,505
Effective search space: 40215150
Effective search space used: 40215150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)