BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0034.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...   200   5e-53

>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  200 bits (509), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/174 (75%), Positives = 155/174 (89%)

Query: 1   MRKLTLGALALTLAATGCADMTATQRGTATGAGIGAGVGGILGAATGGGGGGRTAAGAAI 60
           M+KL++ A+A  LA +GCADM+ TQRGTATGAGIGAG+GGI+GAATGGGGGGR   GAAI
Sbjct: 1   MKKLSIAAIAGVLALSGCADMSPTQRGTATGAGIGAGLGGIIGAATGGGGGGRALGGAAI 60

Query: 61  GAGLGAVIGNVWSNRMENQKRAMEQATQGTGVQVTQTPDNRLKLEIPSDISFNTGRADIQ 120
           G  +GAV GN+WSNRMENQKRAME+ATQGTGVQV+QT DNRLKLEIPSDISF+TGRADI+
Sbjct: 61  GGAIGAVAGNIWSNRMENQKRAMEEATQGTGVQVSQTADNRLKLEIPSDISFDTGRADIK 120

Query: 121 PNFRAVLDKFAATLNENQATTVNIIGHTDSTGSDAVNNPLSMERAARTRDYLTG 174
           P  R VLD+FAATL EN ATTV I+GHTD+TGSDA+N+PLS++RA+RTRDYL+ 
Sbjct: 121 PEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSLQRASRTRDYLSS 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 312,119
Number of extensions: 9204
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)