BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0033.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313670|ref|YP_003777762.1| cytochrome c family protein [He...   204   8e-54

>gi|300313670|ref|YP_003777762.1| cytochrome c family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  204 bits (518), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 107/118 (90%)

Query: 10  ASXPEMIAARIKPVASEGFTFRDSSAPKQLLSGEEVFKSTCAACHGAGIAGAPKVGDPAA 69
           +  P+MIAARIKPV+ +GFTFRD++ PKQLLSGEEV+K+TCAACH AG+AGAPKVGD A+
Sbjct: 52  SQTPDMIAARIKPVSDDGFTFRDANGPKQLLSGEEVYKTTCAACHSAGVAGAPKVGDAAS 111

Query: 70  WKARIGEGYDKLLAHAINGLNAMPPKGGNPDLDDVEIARTVVYMANQSGAKFKDPEVK 127
           W+ARI +GYD L++HAINGL AMP KGGNPDLDDVEI RTVVYMANQSGAKFK+PEVK
Sbjct: 112 WQARIAQGYDTLVSHAINGLRAMPAKGGNPDLDDVEIQRTVVYMANQSGAKFKEPEVK 169


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 708,416
Number of extensions: 24698
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)