BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0032.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311133|ref|YP_003775225.1| hemolysin-adenylate cyclase [He...   115   1e-27
gi|300313670|ref|YP_003777762.1| cytochrome c family protein [He...    55   3e-09

>gi|300311133|ref|YP_003775225.1| hemolysin-adenylate cyclase
           [Herbaspirillum seropedicae SmR1]
          Length = 2656

 Score =  115 bits (289), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 87/123 (70%), Gaps = 2/123 (1%)

Query: 32  DSLIKQVSPEIS-ERPGSVLTPIVVGPQTPAMTLNLLNLTTQTQVGSVLHGSGGSVASAI 90
           D+ I+ V P++  E+PG++ + IVV P  P+M + L+NLTT TQ G  L GSGG   SA 
Sbjct: 195 DAPIRPVDPQLPPEKPGTIPSTIVVDPSQPSMAIKLVNLTTITQTGDSLFGSGGIPVSAT 254

Query: 91  DGSNSVQFAPQVINAGNDVHTIYATSSNTQSDFIKIFKVNVTGDGTVKSVLISGVPSTMT 150
           D    +QF+ QVINAGNDVHTIYA  +N  + FIK+F V ++G+G V SV++SGVP+ M+
Sbjct: 255 DAGLPLQFSTQVINAGNDVHTIYAAGNNAGT-FIKVFDVTISGNGNVLSVIVSGVPANMS 313

Query: 151 ILN 153
           I+N
Sbjct: 314 IVN 316


>gi|300313670|ref|YP_003777762.1| cytochrome c family protein
          [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 29/33 (87%)

Query: 1  LIAAVSAGFLIPIVCIVLLVEYVTNGQTTGADS 33
          LIAAV AGF++PIVCIVLLV+YVTNG  TGA S
Sbjct: 18 LIAAVVAGFMVPIVCIVLLVQYVTNGPKTGAGS 50


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 416,358
Number of extensions: 12762
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)