BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0017.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311403|ref|YP_003775495.1| polymixin resistance glycosyltr...   151   8e-38

>gi|300311403|ref|YP_003775495.1| polymixin resistance
           glycosyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  151 bits (381), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 155/303 (51%), Gaps = 3/303 (0%)

Query: 6   KISLVVPFYNEGGGVHSFARSIAAILAAIHGYDFEIICIDDGSKDTTLQELMQVRSLDPR 65
           ++S+V+P YNE  G+      +   L A+ GY +E+I ++DGS+D +   L +   L P 
Sbjct: 4   ELSVVIPVYNEESGLSKLFERLYPALDAL-GYSYEVIFVNDGSRDRSAGILAEQYRLRPD 62

Query: 66  FT-VLELSRNFGKEAAMTAGIDYADGDAVIPIDADLQDPPELIKTMIAHWEQGAEVVLAK 124
            T V+  + N+G+  A+ AG +   GD V+ +DADLQ+PPE I  ++A   +G + V + 
Sbjct: 63  VTRVVLFNGNYGQHMAIMAGFEATRGDIVVTLDADLQNPPEEIGNLVAKMREGYDYVGSI 122

Query: 125 RVDRSSDSYLKRKTAALFYRFHNTLSGVKIPENVGDFRLMDRVVVKALRQLPERQRFMKG 184
           R  R  DS  +   +    R    ++ +K+ +     R   R V+  + +  E   F+  
Sbjct: 123 RRKRQ-DSAWRTYASKAMNRLREKITRIKMTDQGNMLRAYGRNVIDLVNKCREINTFVPA 181

Query: 185 LFAWVGFKTVTVEYKREAREIGITKFSGWKLWNFALEGITSFSTTPLKIMTYVGAMGTLV 244
           L          +  + E R  G +K+S + L     + +T FS  PL+  + +G   +  
Sbjct: 182 LAYTFSRNPTEIVVEHEERSAGESKYSLYSLIRLNFDLVTGFSLVPLQFFSLLGIGLSFA 241

Query: 245 TACYALYIVIRTLVHGVDVPGYASLLVAILFTGSLQLVGIGILGEYIGRIYMESKQRPVY 304
           +A   + IV+R L+ G +V G  +L     F   + L  IG+LGEYIGRIYM+ + RP Y
Sbjct: 242 SAALFILIVLRRLLIGAEVGGVFTLFAITFFLMGVILFSIGLLGEYIGRIYMQVRARPRY 301

Query: 305 VVR 307
           VV+
Sbjct: 302 VVQ 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,016,157
Number of extensions: 42244
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)