BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0015.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313652|ref|YP_003777744.1| F0F1-type ATP synthase subunit ...   484   e-138

>gi|300313652|ref|YP_003777744.1| F0F1-type ATP synthase subunit a
           [Herbaspirillum seropedicae SmR1]
          Length = 273

 Score =  484 bits (1247), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/269 (92%), Positives = 258/269 (95%)

Query: 3   AAAHAPTASEYIVHHLGHFSSQHQDKIVDFSIINMDTIFWSVFCGVVGCLFMYLAARKAT 62
           AA HAPTASEYIVHHLGH S+QHQ KIVDFSI+N+DTIFWSVFCGV+ CLFM+LAARKAT
Sbjct: 5   AAEHAPTASEYIVHHLGHLSTQHQTKIVDFSILNVDTIFWSVFCGVIACLFMFLAARKAT 64

Query: 63  SGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPLALTVFVWVALMNSLDFLPVDLVSG 122
           SGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAP+ALTVFVWVALMNSLDFLPVDL SG
Sbjct: 65  SGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVDLASG 124

Query: 123 IMRLAGMEEIHHRIVPTADLNGTLGIALGVLALMLYYSFKIKGVGGFIHELFAAPFGIWL 182
           I+ L G+ E+HHRIVPTADLNGTLGIALGVLALMLYYS KIKG GGFIHELFAAPFGIWL
Sbjct: 125 ILGLFGLGEMHHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAAPFGIWL 184

Query: 183 APFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSAATAFGFVGHVIAGSIWA 242
           APFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGS ATAFGF+GHVIAGSIWA
Sbjct: 185 APFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVIAGSIWA 244

Query: 243 IFHILIVLLQAFIFMMLTLVYLGQAHEAH 271
           IFHILIVLLQAFIFMMLTLVYLGQAHEAH
Sbjct: 245 IFHILIVLLQAFIFMMLTLVYLGQAHEAH 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.143    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 784,763
Number of extensions: 29548
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)