BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0010.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313648|ref|YP_003777740.1| F0F1-type ATP synthase subunit ...   605   e-174
gi|300311372|ref|YP_003775464.1| flagellum-specific ATP synthase...    88   1e-18
gi|300310125|ref|YP_003774217.1| type III secretion ATP synthase...    74   1e-14

>gi|300313648|ref|YP_003777740.1| F0F1-type ATP synthase subunit
           alpha [Herbaspirillum seropedicae SmR1]
          Length = 513

 Score =  605 bits (1560), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 301/323 (93%), Positives = 318/323 (98%)

Query: 1   VTCIYVAIGQKASSIKNIVRSLESHGAMEYTIVVAASASESAAMQYVSAYSGCAMGEYFR 60
           +TCIYVAIGQKASS+KN+VR+LE+HGAMEYTIVVAA+ASESAAMQYVSAYSGCAMGEYFR
Sbjct: 191 MTCIYVAIGQKASSVKNVVRALEAHGAMEYTIVVAATASESAAMQYVSAYSGCAMGEYFR 250

Query: 61  DRGQDALIVYDDLSKQAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNPDYVE 120
           DRGQDALIVYDDLSKQAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVN DYVE
Sbjct: 251 DRGQDALIVYDDLSKQAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNADYVE 310

Query: 121 KFTNGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNAGVRPAINA 180
           KFTNGEVKG+TGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNAG+RPAINA
Sbjct: 311 KFTNGEVKGQTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNAGIRPAINA 370

Query: 181 GISVSRVGGAAQTKVIKSLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLDRGARVTEL 240
           GISVSRVGGAAQTKVIK LSGGIRTDLAQYRELAAFAQFASDLDEATRKQLDRGARVTEL
Sbjct: 371 GISVSRVGGAAQTKVIKGLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLDRGARVTEL 430

Query: 241 LKQAQYSPLSISLMAVTLFAVNKGFLDDVEVKKVLAFEAGVHNFMKTSHAALLQKIEDTK 300
           LKQAQY+P SIS+MAVTLFAVNKG++DDVEVKK+LAFE+ +HNFMKTSHA LL+KIEDTK
Sbjct: 431 LKQAQYTPQSISIMAVTLFAVNKGYMDDVEVKKILAFESALHNFMKTSHAELLKKIEDTK 490

Query: 301 QLDKEAEAALAAAIADFKKSGAY 323
           QLDK+AEAALAAAIADFKKSGAY
Sbjct: 491 QLDKDAEAALAAAIADFKKSGAY 513


>gi|300311372|ref|YP_003775464.1| flagellum-specific ATP synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 468

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 13/179 (7%)

Query: 8   IGQKASSIKNIVRSLESHGAMEYTIVVAASASESAAMQYVSAYSGCAMGEYFRDRGQDAL 67
           IG++   +K  +  +     +  ++VVAA A     M+   A    ++ EYFRD+G+D L
Sbjct: 223 IGERGREVKEFIEQILGAEGLARSVVVAAPADTPPLMRLQGAAYCTSIAEYFRDQGKDVL 282

Query: 68  IVYDDLSKQAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNPDYVEKFTNGEV 127
           ++ D L++ A+A R+++L +  PP  + YP  VF     L+ERA            NG+ 
Sbjct: 283 LIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG-----------NGDE 331

Query: 128 KGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNAGVRPAINAGISVSR 186
            G  GS+TA   + T+  D    +     +I DG I L   L  AG  PAI+   S+SR
Sbjct: 332 GG--GSITAFYTVLTEGDDQQDPIADAARAILDGHIVLNRQLAEAGHYPAIDIEQSISR 388


>gi|300310125|ref|YP_003774217.1| type III secretion ATP synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 4   IYVAIGQKASSIKNIVRSLESHGAMEYTIVVAASASESAAMQYVSAYSGCAMGEYFRDRG 63
           ++  IG++   +   +        +  T+VV A++  ++  +  +A++  A+ E FRDRG
Sbjct: 213 VFGLIGERGRELNEFLDHELDAELIRKTVVVCATSDRTSMERSRAAFTATAIAEGFRDRG 272

Query: 64  QDALIVYDDLSKQAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNPDYVEKFT 123
              L++ D L++ A A R++ L    PP R  +   V+ +  RL+ERA            
Sbjct: 273 MKVLLLVDSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGT--------- 323

Query: 124 NGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNAGVRPAINAGIS 183
                   GS+TA+  +       S  +     S+ DG I L   L   G  PAI+   S
Sbjct: 324 ------PQGSITAMYTVLVDGESSSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLAS 377

Query: 184 VSRVGGAAQTKVIKSLSGGIRTDLAQYREL 213
           +SRV     ++  +  +   R  LA+Y+E+
Sbjct: 378 ISRVMSNVTSREHRRAASRFRELLARYQEM 407


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 844,885
Number of extensions: 32286
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 4
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)