BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0005.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...   345   2e-96
gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   121   4e-29

>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  345 bits (884), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 160/231 (69%), Positives = 187/231 (80%)

Query: 2   QVQTLAAQIAEQQAMLFAQHERKVLVVLQGMDTSGKDGTVSGVFGSVNPQGLRIVSYKAP 61
            VQ L+  I  QQ ML+A H+ KVLVVLQGMDTSGKDGTV+ VF +VNPQG+RI ++K P
Sbjct: 38  NVQRLSGLIGVQQQMLYAGHKHKVLVVLQGMDTSGKDGTVNDVFAAVNPQGIRISNFKGP 97

Query: 62  SQLELQHDYLWRIHQQVPAKGELAVFNRSHYEDVLITRVHDWIDAAECKRRYAQINDFER 121
           + +EL HDYLWR+H QVP  GE+AVFNRSHYEDVLITRVHDWID  EC+RRY QINDFER
Sbjct: 98  TAIELAHDYLWRVHAQVPVAGEIAVFNRSHYEDVLITRVHDWIDDKECQRRYRQINDFER 157

Query: 122 LLSETGTVVLKFFLHISKDEQRARLQERVDDPSKHWKFELQDLEERKSWDDYQKVYSQAI 181
           +L ETGTVVLKFFLHISK EQ++RLQ R+DDP+KHWKF+ QDL ERK WD YQ  Y + +
Sbjct: 158 MLWETGTVVLKFFLHISKAEQKSRLQSRIDDPNKHWKFDPQDLAERKFWDAYQTRYQEVL 217

Query: 182 QATDADHAPWYVIPSNSKTHRNLAIAGVVLETLQAMKLAFPPGKKELTGLK 232
           +AT   HAPWYV+P++SKTHRNL +A VVLETLQ +KL FP  K EL  LK
Sbjct: 218 RATSTLHAPWYVVPADSKTHRNLVVANVVLETLQKLKLKFPDPKPELKNLK 268


>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  121 bits (304), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 103/200 (51%)

Query: 24  KVLVVLQGMDTSGKDGTVSGVFGSVNPQGLRIVSYKAPSQLELQHDYLWRIHQQVPAKGE 83
           KV++V +G D +GK G +  +   +NP+  R+ +  AP+  E    Y  R    +PA GE
Sbjct: 78  KVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERTQWYFQRYVSHLPAAGE 137

Query: 84  LAVFNRSHYEDVLITRVHDWIDAAECKRRYAQINDFERLLSETGTVVLKFFLHISKDEQR 143
           + +F+RS Y    + RV  +    + +  +  + +FER+L+  G  V+K++  I+ +EQ 
Sbjct: 138 IVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERMLTRAGIQVIKYWFSITDEEQH 197

Query: 144 ARLQERVDDPSKHWKFELQDLEERKSWDDYQKVYSQAIQATDADHAPWYVIPSNSKTHRN 203
            R   R+ DP K WK    DLE R+ W++Y K     ++ T    APW+V+ +  K    
Sbjct: 198 LRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHIPEAPWWVVQAVDKKKAR 257

Query: 204 LAIAGVVLETLQAMKLAFPP 223
           L     +L+ +   ++  PP
Sbjct: 258 LNCIHHLLQQMPYAEVPHPP 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 711,817
Number of extensions: 28220
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)