BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0003.p
         (196 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313642|ref|YP_003777734.1| arogenate dehydratase [Herbaspi...   323   8e-90

>gi|300313642|ref|YP_003777734.1| arogenate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  323 bits (827), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 146/195 (74%), Positives = 169/195 (86%)

Query: 1   VQLVKXLAKSLGVEVQLVKTTWTNLMSDFLAKCDIAMGGVSVTLDRQKKAGFAVSHMVDG 60
           V+L + LAKSLGVE Q +KTTW+NLM+DF+A+CDIAMGGVS+TLDR +KA F+   MVDG
Sbjct: 72  VELGQALAKSLGVEAQFIKTTWSNLMNDFIAQCDIAMGGVSITLDRARKAAFSEPTMVDG 131

Query: 61  KSPIVRCADVAKFQTLDMIDQPGTRAIFNPGGTXERFARANYKRAQLILHPDNVTIFQQI 120
           K+PI+RCAD  KF+  DMIDQPGTRAI NPGGT ERFARA YKRA L LHPDNVTIFQQI
Sbjct: 132 KAPIIRCADKDKFRNFDMIDQPGTRAIVNPGGTNERFARARYKRATLTLHPDNVTIFQQI 191

Query: 121 IDGKADVMVTDASETLWQAKQHPELCPVHPEQPLQFSEKAFMLPRADVAFKEYVDAWMHL 180
           +DGKADVMVTDASETLWQ+K HPELCPV P+QPLQF+EKA++LPR DVAFK YVD W+HL
Sbjct: 192 VDGKADVMVTDASETLWQSKLHPELCPVTPDQPLQFAEKAYLLPRGDVAFKAYVDTWLHL 251

Query: 181 QKATGEYDRVLNKWL 195
            KATGEY ++ +KWL
Sbjct: 252 AKATGEYQQIFDKWL 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 591,863
Number of extensions: 21739
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 116
Effective length of database: 1,241,070
Effective search space: 143964120
Effective search space used: 143964120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)