BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0005.p
         (104 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311573|ref|YP_003775665.1| DNA polymerase III subunit alph...   100   2e-23

>gi|300311573|ref|YP_003775665.1| DNA polymerase III subunit alpha
           [Herbaspirillum seropedicae SmR1]
          Length = 942

 Score =  100 bits (249), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 65/102 (63%), Gaps = 5/102 (4%)

Query: 1   MKLIIGSCFR---IEWEAGQPPLTLIALA--QNREGYGNLSELITLGRTRADKGSYRIGI 55
            KLIIGSCFR   +E E   P   L  +A  +NREGYGNLSELITL RTRA KGSY +  
Sbjct: 71  FKLIIGSCFRFTGLEDEPAHPLAALTLVALARNREGYGNLSELITLARTRAAKGSYLLHP 130

Query: 56  EDFSSPQESHAHLRGLPDCLLVLAPHYPADGALLAQQADWLA 97
           ED S P  + +HLR LPDC L+L P YPAD   L  Q  W A
Sbjct: 131 EDLSGPPPALSHLRALPDCQLILVPDYPADEETLDAQLRWFA 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 358,979
Number of extensions: 13701
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 33
Effective length of database: 1,283,685
Effective search space: 42361605
Effective search space used: 42361605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)