BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0007.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312966|ref|YP_003777058.1| major facilitator superfamily p...   129   1e-31
gi|300314020|ref|YP_003778112.1| major facilitator superfamily p...    60   1e-10

>gi|300312966|ref|YP_003777058.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score =  129 bits (325), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 129/196 (65%)

Query: 1   LINANAAGWSSAATLLRTGGGILMLALFVPVELMQKRPMIDLRLFRHAPFVGAVLAMFGY 60
           LI     GW+S A + R  GG L+L LF+  +     PM++L LFRHA FV AV AMF Y
Sbjct: 242 LITGPEHGWTSVACVARGLGGALLLVLFIAWQRRAAHPMLELSLFRHAGFVAAVAAMFAY 301

Query: 61  ASSAQVMMTFLPLYLQNAFAYSAIVAGLAMLPFALAMMIFPRVGAALTRYMPLHGVMGLG 120
           A+SAQVM + LPL+LQNA   SA   GLAMLPFALAM++ P+VG+ L R++    ++ LG
Sbjct: 302 AASAQVMASLLPLFLQNARGLSAWQTGLAMLPFALAMLLLPQVGSRLARWLSSPQMLALG 361

Query: 121 MALVCAGNVLVAIAAYAGSYWMVLAGMLVTGSGAGLLNGNTQKAIMNCVPRERTGMASGI 180
           + +   GN+L+  AA +G+      GM V GSG GLLNG TQKAIM  VPRER GMASGI
Sbjct: 362 LGVTALGNLLMIQAALSGAAAWTALGMAVLGSGGGLLNGQTQKAIMGNVPRERAGMASGI 421

Query: 181 STTTRFAAIVLAIACL 196
           STT RF  ++   A L
Sbjct: 422 STTARFTGVLAGFAGL 437


>gi|300314020|ref|YP_003778112.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 32  ELMQKRPMIDLRLFRHAPF-VGAVLAMFGYASSAQVMMTFLPLYLQNAFAYSAIVAGLAM 90
           EL    PM+ + LFRH  F + AV A+  +A+     ++ LP +  +    S +  GL M
Sbjct: 265 ELSHPAPMLPVDLFRHPMFSLSAVTAVCSFAAQGLAFVS-LPFFFHHDLGRSQVEIGLLM 323

Query: 91  LPFALAMMIFPRVGAALTRYMPLHGVMGLGMALVCAGNVLVAIAAYAGSYWMVLAGMLVT 150
            P+ +A+ I   +   ++   P+  + G+G+AL+CAG + +     + S W +   ML+ 
Sbjct: 324 TPWPVAVAIMAPIAGRMSDRYPVGMLGGVGLALLCAGLLSMTFMPASPSVWEISWRMLLC 383

Query: 151 GSGAGLLNGNTQKAIMNCVPRERTGMASGISTTTRF----AAIVLAIACLLLLXKMGSR 205
           G G G       KA+M   P  R+G ASGI  T R         L   C  L    GSR
Sbjct: 384 GMGFGFFQSPNLKALMTSAPPHRSGGASGIVATARLLGQSVGAALVALCFNLSQTQGSR 442


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 647,919
Number of extensions: 27176
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)