BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0002.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid amidoh...   270   1e-73
gi|300312555|ref|YP_003776647.1| bifunctional OHCU decarboxylase...   175   3e-45
gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum ...    74   8e-15

>gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid
           amidohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  270 bits (689), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 156/202 (77%)

Query: 17  VKTVPEQYRSCGQEIMQRADALAVHTEAVGMLTRTYLTPMHHAAAKQVGEWMNAAGMQVR 76
           +K VPE ++  G++ MQ A  LA HTE+ GMLTRTYLTP H AAA  +  WM  AGM+VR
Sbjct: 1   MKAVPEPFQQAGRQAMQWAQQLAQHTESPGMLTRTYLTPQHQAAAAALARWMEEAGMRVR 60

Query: 77  RDDAGNVIGRYEAAPGHEKAAALVTGSHFDTVRNGGKYDGNLGILLPVSCIAAWHREGRR 136
           RD+AGNVIGRYEAAPGHE A + VTGSHFDTVRNGG YDGNLGI+LP++CIA WHR+G+R
Sbjct: 61  RDNAGNVIGRYEAAPGHESAPSFVTGSHFDTVRNGGWYDGNLGIVLPLACIARWHRQGQR 120

Query: 137 FPFPIEVIGFAEEEGVRFKATLLGSRAVAGTFDKTVLDNLDEQGNSMREVMRAAGFDPDR 196
           F FPIEVIGFAEEEGVRFKATLLGSR VAGTFD+ VL+N D  G +MR  +RAAG DPD 
Sbjct: 121 FAFPIEVIGFAEEEGVRFKATLLGSRTVAGTFDQAVLENRDSDGVTMRAAIRAAGLDPDG 180

Query: 197 LDASAWPAGFGLSYSSMLNEHG 218
           + A AW  G   ++  +  E G
Sbjct: 181 IAADAWQPGSMAAFVEVHIEQG 202


>gi|300312555|ref|YP_003776647.1| bifunctional OHCU
           decarboxylase/N-carbamoyl-L-amino acid amidohydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 587

 Score =  175 bits (444), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 120/193 (62%), Gaps = 2/193 (1%)

Query: 26  SCGQEIMQRADALAVHTEAVGMLTRTYLTPMHHAAAKQVGEWMNAAGMQVRRDDAGNVIG 85
           + G  +MQ A+ +   +E  G LT TYLT  H   A Q+ +WM  AGMQV  D  GNV+G
Sbjct: 178 TLGATVMQWAEEIGALSEEEGALTCTYLTETHQRTAAQIAQWMREAGMQVHIDAVGNVVG 237

Query: 86  RYEAAPGHEKAAALVTGSHFDTVRNGGKYDGNLGILLPVSCIAAWHREGRRFPFPIEVIG 145
           RY++   H +A  L+TGSH+DTVRNGGKYDG  GILLP++ +   H  G   PF +EVIG
Sbjct: 238 RYQSP--HPQAKTLLTGSHYDTVRNGGKYDGREGILLPIAVVKYLHERGETLPFHLEVIG 295

Query: 146 FAEEEGVRFKATLLGSRAVAGTFDKTVLDNLDEQGNSMREVMRAAGFDPDRLDASAWPAG 205
           F+EEEGVRFK+T LGS A+ G FD  +LD  D++  +MRE++  AG D   +   A    
Sbjct: 296 FSEEEGVRFKSTFLGSNAITGHFDMALLDLRDKEDVTMRELIIQAGHDVAAIPQIARDPA 355

Query: 206 FGLSYSSMLNEHG 218
             L+Y  +  E G
Sbjct: 356 EILAYVEVHIEQG 368


>gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 419

 Score = 74.3 bits (181), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 44  AVGMLTRTYLTPMHHAAAKQVGEWMNAAGMQVRRDDAGNVIGRYEAAPGHEKA-AALVTG 102
           A G + R  LT +       V  W  A GM V  D  GN+  R    PG   A   ++TG
Sbjct: 31  AKGGVCRLALTDLDKQGRDLVSSWARAEGMSVVVDQIGNIFMRR---PGRNNALPPVMTG 87

Query: 103 SHFDTVRNGGKYDGNLGILLPVSCIAAWHREGRRFPFPIEVIGFAEEEGVRFKATLLGSR 162
           SH DT   GGK+DGN G+L  +  +   ++   +   PIEV  +  EEG RF   ++GS 
Sbjct: 88  SHIDTQPTGGKFDGNYGVLAGIEVVRTLNQHNIQTEAPIEVAVWTNEEGSRFVPVMMGSG 147

Query: 163 AVAGTFD-KTVLDNLDEQGNSMREVMRAAGF 192
              G F      +  D +G  +R+ +   G+
Sbjct: 148 VFCGAFTLDHAYNATDVEGKKVRDELERIGY 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 906,344
Number of extensions: 41258
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)