BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0060.0004.p
         (516 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313518|ref|YP_003777610.1| type III effector HopAN1 protei...   449   e-127
gi|300313517|ref|YP_003777609.1| class II aldolase/adducin domai...   360   e-100

>gi|300313518|ref|YP_003777610.1| type III effector HopAN1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  449 bits (1154), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/239 (88%), Positives = 227/239 (94%)

Query: 1   MSQAKPLLGCIADDFTGATDLANMLVRGGMRTVQTIGIPEQLPAVAADALVIALKSRTIP 60
           MS ++PLLGCIADDFTGATDLANMLVRGGMRTVQTIG+P ++PAVAADALVIALKSRT+P
Sbjct: 1   MSTSRPLLGCIADDFTGATDLANMLVRGGMRTVQTIGVPAEMPAVAADALVIALKSRTVP 60

Query: 61  AAEAVEQSLAALRWLQQQGCTQFFFKYCSTFDSTDAGNIGQVTDALLAELGADFTIACPA 120
           AAEA+ QSLAALRWLQQQGCTQFFFKYCSTFDSTDAGNIG VTDAL+ ELG DFTIACPA
Sbjct: 61  AAEAIAQSLAALRWLQQQGCTQFFFKYCSTFDSTDAGNIGPVTDALMKELGVDFTIACPA 120

Query: 121 FPENGRTIYRGYLFVADGLLNESGMENHPLTPMTDANLVRVLQRQTTSKVGLVRYDTVSR 180
           FPENGRTIYRGYLFVAD LLNESGMENHPLTPMTDANLVRVLQRQT SKVGLVRYDTV+R
Sbjct: 121 FPENGRTIYRGYLFVADALLNESGMENHPLTPMTDANLVRVLQRQTESKVGLVRYDTVAR 180

Query: 181 DAAAVTERFTALRTDGVKMAIADAVSDRDLYVLGEACAELKLVTGGSGIALGLPENFRK 239
            AAA  ERFTALR++GVKMAIADAVSD+DL+ LGEACAELKL+TGGSG+ALGLPENFR+
Sbjct: 181 GAAATQERFTALRSEGVKMAIADAVSDKDLFTLGEACAELKLITGGSGVALGLPENFRR 239


>gi|300313517|ref|YP_003777609.1| class II aldolase/adducin
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 215

 Score =  360 bits (923), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/215 (79%), Positives = 187/215 (86%), Gaps = 1/215 (0%)

Query: 303 MSIN-KENQLREEICRTGASLYQRGYTVGSAGNISARLDDGWLITPTDACLGYLDPAGIA 361
           MS N  E+ LREEICR GASLYQRGYTVGSAGNISARL+DGWLITPTDACLG+LDPA IA
Sbjct: 1   MSRNTNESALREEICRIGASLYQRGYTVGSAGNISARLEDGWLITPTDACLGFLDPAAIA 60

Query: 362 KVDTAGNWVSGDKPSKTLALHRMVYDNNPEMHAVVHTHSTYLVKLTISGVWSPDDVLPPI 421
           KV+ AG WVSGDKPSKTL LHR +YDNNPEMHAVVHTHST+LV LTI+GV+S  DVLPPI
Sbjct: 61  KVNAAGEWVSGDKPSKTLVLHRAIYDNNPEMHAVVHTHSTHLVSLTINGVYSEQDVLPPI 120

Query: 422 TPYYVMKVGHIPFIAYRRPGDPQVAEQVKQLACKVRGVLLERLGPVVWESSVSKAAYALE 481
           TPYYVMKVGHIP I Y RPG P+VAEQV ++A +VRGVLLERLGPVVWESSVSKAA+ALE
Sbjct: 121 TPYYVMKVGHIPLIRYARPGAPEVAEQVAKIATQVRGVLLERLGPVVWESSVSKAAFALE 180

Query: 482 ELEETAMLWHLAGGNVAPLDDAALTELREVFNARW 516
           ELEETA LWHLAGG   PL++ AL +LR  F ARW
Sbjct: 181 ELEETAKLWHLAGGRATPLEEPALEDLRATFKARW 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,527,411
Number of extensions: 61338
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 2
Length of query: 516
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 427
Effective length of database: 1,198,455
Effective search space: 511740285
Effective search space used: 511740285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)