BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0002.p
         (367 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodies...   290   1e-79

>gi|300310170|ref|YP_003774262.1| diguanylate
           cyclase/phosphodiesterase A protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1002

 Score =  290 bits (742), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/333 (44%), Positives = 200/333 (60%), Gaps = 34/333 (10%)

Query: 6   FWRRLHQGEVVSGTLQRMRSDGSRLWLEATCNPVFDAEGRLLRVVSIAADITAHI----D 61
           FWR +  G   SG   R    G  +W EAT +P+ DA G+  RV+ I  D+T  +     
Sbjct: 205 FWRDVSLGRFFSGRFPRRTRSGRTIWWEATYSPLLDAHGKAERVICIGTDVTYRVTREKS 264

Query: 62  DSQEKHSVLRAINRSLGVIEF---------------------SEGXIGRRPRELFEGQTA 100
           D +  H +   IN +   +                       S+  IGR P ELF  +  
Sbjct: 265 DREHLHLLSLGINETDNAVLITDDQNRIVFHNTGFTRMLGFESQQVIGRLPGELFASRPT 324

Query: 101 ILKMIEDCYAVIAEGRSFHGEEMMVDKQGHPLWVSTVVNPILDGDGKLINAVCILTDITN 160
            +K +E C+  + +GRS+H EE++ D Q  P+W+S VVNPILDG GKLI+AVC++TDITN
Sbjct: 325 FVKSLERCHGELVQGRSYHTEELIHDMQEQPVWISAVVNPILDGAGKLIHAVCVMTDITN 384

Query: 161 TKMHEVLQYKALNAMVREASLQEVLTMVCLELERMAPDVVASILRVDEQGLLHPVAGPSL 220
           TK+HEVLQY+ LNAM R++SL E + ++C E+ER+AP+V+AS+LRVDE G L  +A PSL
Sbjct: 385 TKVHEVLQYRVLNAMARDSSLSEQMNLLCEEVERVAPEVIASVLRVDEHGCLRTLAAPSL 444

Query: 221 PEEYSRALEGLAIGPSVGSCGTAAFRAEPVEVTDIATDPLWADYRDLVLPTGLQSCWSTP 280
           PE YS+A++GL +GP VG CG+AA+  + V   DI TDP W DY+ L LP GL++CWSTP
Sbjct: 445 PEAYSKAIDGLHVGPMVGCCGSAAYTGQTVISEDIQTDPHWNDYKHLALPHGLRACWSTP 504

Query: 281 IKSADGXIRHRAGAMRPEPCHRRGQAHPGQPVA 313
           IKSA G +    G             HPGQP A
Sbjct: 505 IKSASGQVIGTFGFY---------YRHPGQPSA 528



 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 20/175 (11%)

Query: 5   EFWRRLHQGEVVSGTLQRMRSDGSRLWLEATCNPVFDAEGRLLRVVSIAADITAHIDDSQ 64
           +FW  L +GE+++GTLQR    G+ +WLEA C+P+ DA+G+LL+V+S+AADI+AHIDDS+
Sbjct: 82  QFWEHLRKGELIAGTLQRRHVGGATVWLEALCSPILDAQGQLLKVISVAADISAHIDDSR 141

Query: 65  EKHSVLRAINRSLGVIEFS--------------------EGXIGRRPRELFEGQTAILKM 104
             +S+L A+NRSLGV+E S                    E  +G+    L E   A  + 
Sbjct: 142 HSNSILSALNRSLGVVELSPEGVILAANGNYLKTMEYLAEDLLGQPHSILCEADYAASEE 201

Query: 105 IEDCYAVIAEGRSFHGEEMMVDKQGHPLWVSTVVNPILDGDGKLINAVCILTDIT 159
               +  ++ GR F G      + G  +W     +P+LD  GK    +CI TD+T
Sbjct: 202 YTCFWRDVSLGRFFSGRFPRRTRSGRTIWWEATYSPLLDAHGKAERVICIGTDVT 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,239,785
Number of extensions: 53398
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,207,925
Effective search space: 338219000
Effective search space used: 338219000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)