BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0058.0020.p
         (100 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A...    55   1e-09
gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ...    52   7e-09

>gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 55.1 bits (131), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 1   LLSGLIPRSAGSIRVNGEEVREPHRDIGMVFQSPVLLPWKTAIENVLLPARVL 53
           L +GL   + GS+ ++G+ V  P + +GM FQ+P LLPW+T ++NVLLP  ++
Sbjct: 52  LATGLKQPNRGSVVIDGQTVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIV 104


>gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 52.4 bits (124), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 2   LSGLIPRSAGSIRVNGEEVREPHRDIGMVFQSPVLLPWKTAIENVLLPARVLGLDMATSR 61
           ++G +P S G I ++G+ V  P  + G+VFQ   LLPWK+  +NV L  +  G+  + SR
Sbjct: 52  MAGFLPLSEGRISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSR 111

Query: 62  VRARAXPELYRWSAHARA 79
            RA+    L      ARA
Sbjct: 112 ERAQELLRLVGLQDFARA 129


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 243,699
Number of extensions: 8317
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 100
Length of database: 1,619,870
Length adjustment: 69
Effective length of query: 31
Effective length of database: 1,293,155
Effective search space: 40087805
Effective search space used: 40087805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)