BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0058.0012.p
         (199 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313263|ref|YP_003777355.1| 3-octaprenyl-4-hydroxybenzoate ...   291   3e-80

>gi|300313263|ref|YP_003777355.1| 3-octaprenyl-4-hydroxybenzoate
           carboxy-lyase [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  291 bits (744), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/172 (81%), Positives = 155/172 (90%), Gaps = 1/172 (0%)

Query: 3   YGVRLLGVLRDAG-VETHLLVSEAGVLNLHQELDMSRKDVEALADVVHPVRDVGASIASG 61
           YGVRLL  LR  G +ETHL+VSEAGVLNLHQELDM RKDVEALADVVH VRDVGA IASG
Sbjct: 24  YGVRLLEHLRKHGQIETHLMVSEAGVLNLHQELDMRRKDVEALADVVHNVRDVGACIASG 83

Query: 62  SFASSGMIVAPCSMKTLAAIANGLSDNLISRAADVVLKERRRLVLMVRETPFNLAHLRNM 121
           SFAS+GM+VAPCSMKTLAA+A+GLSDNLI+RAADVVLKERRRLVLMVRETPFNLAHLRNM
Sbjct: 84  SFASTGMVVAPCSMKTLAAVAHGLSDNLITRAADVVLKERRRLVLMVRETPFNLAHLRNM 143

Query: 122 TSVTEMGGIIFPPLPGFYHRPQSIAEMIDHTLGRVLDLYDIPHALTPRWAGL 173
           T+VTEMGG+IFPPLPGFY RP S+ EM+DHTLGRVLD++ I   LTP W G+
Sbjct: 144 TAVTEMGGVIFPPLPGFYQRPASMEEMVDHTLGRVLDMFGISMQLTPEWQGM 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 541,103
Number of extensions: 19231
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,236,335
Effective search space: 145887530
Effective search space used: 145887530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)