BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0007.p (157 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbasp... 289 7e-80 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 97 8e-22 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 91 4e-20 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 91 6e-20 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 89 1e-19 >gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 247 Score = 289 bits (740), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 146/157 (92%), Positives = 153/157 (97%) Query: 1 VFRKLNVEDNIRAVLELRKENGVSLSRDEIEGRLNSLLHELQIEKLRESPALSLSGGERR 60 VFRKL VEDNIRAVLELR+E+G LSRDEIEGRLN+LLHELQIEKLRES ALSLSGGERR Sbjct: 91 VFRKLTVEDNIRAVLELRQEDGKPLSRDEIEGRLNNLLHELQIEKLRESQALSLSGGERR 150 Query: 61 RVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGIC 120 RVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGIC Sbjct: 151 RVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGIC 210 Query: 121 DRAYIINQGTVLASGSPDDIIADESVRRVYLGEHFRM 157 DRAYIINQGTVLASG+P++IIA+ESVRRVYLGEHFRM Sbjct: 211 DRAYIINQGTVLASGNPEEIIANESVRRVYLGEHFRM 247 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 96.7 bits (239), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 76/117 (64%) Query: 37 LLHELQIEKLRESPALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIV 96 LL ++++ A SLS GE+R++E ARALAT P+ +LLDEP AG++P E+ + Sbjct: 134 LLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEI 193 Query: 97 RFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGSPDDIIADESVRRVYLGE 153 +K+RG + + +H++R +G+C+R ++N G ++A G+PD I ++ V YLG+ Sbjct: 194 VNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGK 250 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 90.9 bits (224), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 1/129 (0%) Query: 26 SRDEIEGRLNSLLHELQIEKLRESPALSLSGGERRRVEIARALATDPRFVLLDEPFAGID 85 S E R L +L + L A +LS G +RRVEIAR + T PR +LLDEP AG++ Sbjct: 129 SEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLN 188 Query: 86 PIAVIEIQRIV-RFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGSPDDIIADE 144 P E+ +++ R +E G+ VL+ +H++ +GI DR ++ G + +G+P+ + +DE Sbjct: 189 PQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDE 248 Query: 145 SVRRVYLGE 153 V + YLGE Sbjct: 249 RVIKAYLGE 257 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 90.5 bits (223), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 67/103 (65%) Query: 51 ALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITD 110 A ++SGGE++ + I RAL + PR +LLDEP G+ P+ + +I I+R ++E G+ V + + Sbjct: 132 AGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVE 191 Query: 111 HNVRETLGICDRAYIINQGTVLASGSPDDIIADESVRRVYLGE 153 N + LG+ DR Y++ G V+ S + +++A+ VR+ YLG Sbjct: 192 QNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGH 234 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 10/152 (6%) Query: 1 VFRKLNVEDNIRAVLELRKENGVSLSRDEIEGRLNSLLHELQIEKLRESPALSLSGGERR 60 +F+ L VE+N+ + RKE+ L +EI L ++ R++ LSGGE++ Sbjct: 88 IFKLLTVEENL--TMAARKESAWGL--EEIYAIFPRL------KERRKNGGGQLSGGEQQ 137 Query: 61 RVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGIC 120 + IARAL T PR ++LDEP G+ P+ V EI +R +K G+ +++ + N+ + Sbjct: 138 MLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATGMSIILVEQNLEVCTQLA 197 Query: 121 DRAYIINQGTVLASGSPDDIIADESVRRVYLG 152 DR YI+ QG ++ GS + +ADE V+ YLG Sbjct: 198 DRHYIVEQGRIVYHGSNAEFLADEGVKDRYLG 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.142 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 469,725 Number of extensions: 18912 Number of successful extensions: 264 Number of sequences better than 1.0e-08: 102 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 107 Length of query: 157 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 79 Effective length of database: 1,250,540 Effective search space: 98792660 Effective search space used: 98792660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)