BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0058.0006.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313256|ref|YP_003777348.1| low-specificity phosphatase [He...   223   1e-59
gi|300313257|ref|YP_003777349.1| transmembrane protein [Herbaspi...   142   2e-35

>gi|300313256|ref|YP_003777348.1| low-specificity phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  223 bits (568), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/150 (74%), Positives = 125/150 (83%), Gaps = 4/150 (2%)

Query: 6   SKAST---AAVANAKQVRLMIFDVDGVLTDGGLYYGPEGEPVKRFNALDGHGIKMLQQFG 62
           S AST   AA+  A  +RLMIFDVDGVLTDGGL+YG +GE  KRFNALDGHGIK++QQFG
Sbjct: 5   SFASTLPAAALEKAAGIRLMIFDVDGVLTDGGLFYGEDGEAFKRFNALDGHGIKLMQQFG 64

Query: 63  GIATAIITARQSPIVLRRAKDLGIAHVFQGVHDKRIAFAQLLEQTGVAAAACGYLGDDVI 122
             A AIITARQSP VLRRA+DLGIAHVFQGVHDKR AF QLL+ TG+ A  CGYLGDDVI
Sbjct: 65  -TAAAIITARQSPYVLRRARDLGIAHVFQGVHDKRQAFEQLLQHTGLNANVCGYLGDDVI 123

Query: 123 DLPVLTKVGFTACVANGHHDVKQRAQYITE 152
           DLPVLT+VGF ACVANGH +VK R+ Y+T+
Sbjct: 124 DLPVLTRVGFKACVANGHREVKLRSHYVTQ 153


>gi|300313257|ref|YP_003777349.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  142 bits (359), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 86/122 (70%)

Query: 154 GEKMVHFPIDDSFEVTLPVITSLAPEKPSMTLRSKRARIEDDNTKIHMYDNVNADRPAFG 213
           G KMVH+P DDSFE+T PV+ +L   KP M L S  AR+ D+ T+IHMY N NA R  + 
Sbjct: 76  GVKMVHYPTDDSFEITKPVVHNLDQGKPPMELYSDTARVTDEQTQIHMYGNANAIRAPYK 135

Query: 214 TAEDMHLKTEYLLLLPDEDIARTDKPVEITMGQSIMTGTGMIANNATQEFQLLHNVRGTY 273
             E M + ++YLLLLPD++I +TDKPV +TMG + + G GM+ANNATQ  QL  NVRG Y
Sbjct: 136 GREQMQVVSDYLLLLPDDEIVKTDKPVAMTMGTTRLNGVGMVANNATQVVQLFGNVRGYY 195

Query: 274 QP 275
           +P
Sbjct: 196 EP 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 867,040
Number of extensions: 35697
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)