BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0058.0005.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313255|ref|YP_003777347.1| sugar phosphate isomerase [Herb...   523   e-149

>gi|300313255|ref|YP_003777347.1| sugar phosphate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  523 bits (1346), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/300 (85%), Positives = 276/300 (92%)

Query: 1   MSDDAAEPLARAVDVLLECKGRVVVSGIGKSGHIGRKIAATFASTGTPALFMHPAEAAHG 60
           + DDA+EPLA+AV +LL+C GR VVSGIGKSGHIGRKIAAT ASTGTP+LFMHPAEAAHG
Sbjct: 43  LGDDASEPLAQAVHLLLQCNGRAVVSGIGKSGHIGRKIAATLASTGTPSLFMHPAEAAHG 102

Query: 61  DLGMVTPGDVFIAISNSGETAELMAIVPIIKRMGAYLIAMTGNDESSLARLSAIHLNVGV 120
           DLGMVTP DVFIAISNSGET ELMAI+PI+KRMGA +IAMTGND SSLAR++ +HLNVGV
Sbjct: 103 DLGMVTPNDVFIAISNSGETGELMAIMPIVKRMGAVIIAMTGNDNSSLARMANVHLNVGV 162

Query: 121 AKEACTLNLAPTASTTATLAMGDALAVSLLDARGFLEEDFARSHPGGALGRRLLTHVRDV 180
            KEACTLNLAPTASTTATLAMGDALAVSLLDARGFLEEDFARSHPGGALGRRLLTHVRDV
Sbjct: 163 DKEACTLNLAPTASTTATLAMGDALAVSLLDARGFLEEDFARSHPGGALGRRLLTHVRDV 222

Query: 181 MRTGDAIPAVKPDVSLSAALMEITRKGMAMTAVIDDDNRPIGVFTDGDLRRLLERGEDFT 240
           MR+GDAIPAV PDVSLS ALMEITRKGMAMTAV+D D RPIGVFTDGDLRRLLERG+DF+
Sbjct: 223 MRSGDAIPAVSPDVSLSQALMEITRKGMAMTAVVDADFRPIGVFTDGDLRRLLERGQDFS 282

Query: 241 TSSIADVMHRGPRTINPDQLAVDAVQLMEEFRINQVLVADAQGKLVGALHIHDLTRAKVI 300
              IA++MH  PRT+N DQLAVDAVQLMEEFRINQ+LV DAQG L GALHIHDLTRAKVI
Sbjct: 283 QFRIAEIMHANPRTVNQDQLAVDAVQLMEEFRINQLLVTDAQGVLTGALHIHDLTRAKVI 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 901,505
Number of extensions: 36797
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)