BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0015.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 107 1e-24 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 84 1e-17 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 81 9e-17 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 75 5e-15 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 72 7e-14 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 107 bits (266), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 63/213 (29%) Query: 1 MLEVNNLKVEF-VRNG------KRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILR 53 +L+V +L F V++G +RV V+ VSF + A ET+ ++GESGCG Sbjct: 312 ILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCG---------- 361 Query: 54 LFPMASKAQLSGSVQYNNGVEVCNMLEADDATLRSMRGKEIAMIFQEPMTSLXRLIEPTA 113 +S G+ SL RL++ Sbjct: 362 ---------------------------------KSTTGR-----------SLLRLVDIAG 377 Query: 114 GSVNFMGEEISTLSSSSLRAMRRNMQMVFQDPFASLNPRMTIGEVLEEPLIVHGLFDRAT 173 G V F G +++ L S LR +RR++Q +FQDPFASL+PRMT+G + EP++VHG+ + A Sbjct: 378 GKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGMKEGA- 436 Query: 174 RKRKVAEILDVVGLNQAYASRHPHEFSGARDDR 206 + +V +L VGL + R+PHEFSG + R Sbjct: 437 -QERVDALLTRVGLTPEHGQRYPHEFSGGQRQR 468 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 47/209 (22%) Query: 1 MLEVNNLKVEFVRNGKRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASK 60 +L+VN+L V F + + V V +SF V ET+ ++GESG GKSV++L+I+RL Sbjct: 7 VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 Query: 61 AQLSGSVQY-NNGVEVCNMLEADDATLRSMRGKEIAMIFQEPMTSLXRLIEPTAGSVNFM 119 SGS+Q+ + ++ +AD+AT+RS+RG EIAMIFQEPMT Sbjct: 67 KIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMT---------------- 110 Query: 120 GEEISTLSSSSLRAMRRNMQMVFQDPFASLNPRMTIGEVLEEPLIVHGLFDRATRKRKVA 179 SLNP T+GE + E + +H RA + + Sbjct: 111 ----------------------------SLNPVFTVGEQIAESIRLHQGLGRAAAQAEAL 142 Query: 180 EILDVVGLNQA--YASRHPHEFSGARDDR 206 +L++V + +A RHPH+ SG R Sbjct: 143 RMLEMVRIPEAKRVLGRHPHQLSGGMRQR 171 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 81/136 (59%), Gaps = 9/136 (6%) Query: 81 ADDATLRSMRGKEIAMIFQEPMTS------LXRLIEPTAGSVNFMGEEISTLSSSSLRAM 134 +D +LR RG+ + ++ + L L+ PT+G+V G+E+ + +A Sbjct: 41 VNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPPTSGNVLINGQEVD---PTERKAH 97 Query: 135 RRNMQMVFQDPFASLNPRMTIGEVLEEPLIVHGLFDRATRKRKVAEILDVVGLNQAYASR 194 R++Q +FQDP++SLNPR T+ E++ PL +HG+ + A R R+V +ILD+VG+ + ++ Sbjct: 98 ARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIGNAAERNRQVKDILDLVGMPERTHAQ 157 Query: 195 HPHEFSGARDDRHGAA 210 +P++ SG + R A Sbjct: 158 YPNQLSGGQRQRVAIA 173 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 81.3 bits (199), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 51/208 (24%) Query: 1 MLEVNNLKVEFVRNGKRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASK 60 +L+V NLKV+ + V G+ F V E + L+GESGCGKS+T+L+++ L P K Sbjct: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLP--RK 61 Query: 61 AQLSGSVQYNNGVEVCNMLEADDATLRSMRGKEIAMIFQEPMTSLXRLIEPTAGSVNFMG 120 AQ S +GV++ M D L +RGK +AMIFQEPMT Sbjct: 62 AQCSADHILFDGVDLHGM---PDKQLMQLRGKRMAMIFQEPMT----------------- 101 Query: 121 EEISTLSSSSLRAMRRNMQMVFQDPFASLNPRMTIGEVLEEPLIVHGLFDRATRKRKVAE 180 SLNP T+G L E ++ RA + + Sbjct: 102 ---------------------------SLNPSYTLGNQLCEAMLQQPGVSRAEARERALY 134 Query: 181 ILDVVGLNQAY--ASRHPHEFSGARDDR 206 +L G++ A ++PH+ SG R Sbjct: 135 LLHRTGISNAEDRLRQYPHQLSGGLRQR 162 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 75.1 bits (183), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 1/100 (1%) Query: 112 TAGSVNFMGEEISTLSSSSLRAMRRNMQMVFQDPFASLNPRMTIGEVLEEPLIVHGLFDR 171 AGS+ F G IS LR +R MQ+VFQDPFASL+PR T+ +++ E L +H Sbjct: 331 VAGSIRFDGVPISERPQRELRPLRSRMQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRS 390 Query: 172 ATRKRK-VAEILDVVGLNQAYASRHPHEFSGARDDRHGAA 210 A ++R+ + L+ VGL+ A R+PHEFSG + R A Sbjct: 391 AEQQRQAIVAALEEVGLSAAVLERYPHEFSGGQRQRIAIA 430 Score = 72.4 bits (176), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 57/208 (27%) Query: 1 MLEVNNLKVEFVRNGKRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASK 60 +LEVNNL V F G V VD VSF++ E L+GESG GK+V++L++++L Sbjct: 5 LLEVNNLTVRF---GDTVV-VDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQL---NQD 57 Query: 61 AQLSGSVQYNNGVEVCNMLEADDATLRSMRGKEIAMIFQEPMTSLXRLIEPTAGSVNFMG 120 A+ GS+ + ++L + ++ +RG ++AMIFQEPMT Sbjct: 58 ARYEGSILLDGQ----DVLAKSERQMQQVRGNDVAMIFQEPMT----------------- 96 Query: 121 EEISTLSSSSLRAMRRNMQMVFQDPFASLNPRMTIGEVLEEPLIVHGLFDRATRKRKVAE 180 +LNP TIG + E L+ H + R+ Sbjct: 97 ---------------------------ALNPLFTIGNQIAEVLMHHEGLNARDAARRAVA 129 Query: 181 ILDVVGLNQAY--ASRHPHEFSGARDDR 206 +L+ G+ + A +PHE SG + R Sbjct: 130 LLEKTGIPEPARRALSYPHELSGGQRQR 157 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%) Query: 2 LEVNNLKVEFVRNGKRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASKA 61 LEV NL+ F + VD VS SVG +GL+GESG GKSVT SIL + + Sbjct: 6 LEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRI 65 Query: 62 QLSGSVQYNNGVEVCNMLEADDATLRSMRGKEIAMIFQEPMTSLXRLIEPTAGSVN 117 + G + + +++ D +LR ++G IAMIFQ+PM +L +++ A V+ Sbjct: 66 -VGGEILFQGR----DLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVD 116 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 753,482 Number of extensions: 27194 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 12 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)