BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0021.p
         (91 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311988|ref|YP_003776080.1| D-3-phosphoglycerate dehydrogen...   107   2e-25
gi|300313156|ref|YP_003777248.1| D-2-hydroxyacid dehydrogenase [...    61   1e-11

>gi|300311988|ref|YP_003776080.1| D-3-phosphoglycerate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  107 bits (267), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 57/77 (74%)

Query: 14  LGEGITFGTAALAAALGKGELGGAGLDVYESEPQPPRELLEFKNVVLTPHMAGWSPEAIT 73
           +G G    T AL AAL  G L GAGLDVYE EPQPP  L+   NVVLTPH+AGWSPEAI 
Sbjct: 228 IGRGSIVDTDALGAALSSGRLAGAGLDVYEGEPQPPAALIALPNVVLTPHIAGWSPEAIR 287

Query: 74  ASVSKFLRNAEAHFAAA 90
           ASV++FLRN E HFAAA
Sbjct: 288 ASVTQFLRNCEEHFAAA 304


>gi|300313156|ref|YP_003777248.1| D-2-hydroxyacid dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score = 61.2 bits (147), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 41/77 (53%)

Query: 14  LGEGITFGTAALAAALGKGELGGAGLDVYESEPQPPRELLEFKNVVLTPHMAGWSPEAIT 73
           +  G     AAL AAL  G + GAGLDV+  EP  P EL    NVVLTPHMA  +    T
Sbjct: 232 VARGSVVDEAALIAALKTGVIAGAGLDVFADEPNVPAELAALDNVVLTPHMASGTLVTRT 291

Query: 74  ASVSKFLRNAEAHFAAA 90
           A       N +AHF+ A
Sbjct: 292 AMADLAFNNLQAHFSGA 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 202,678
Number of extensions: 5040
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 91
Length of database: 1,619,870
Length adjustment: 61
Effective length of query: 30
Effective length of database: 1,331,035
Effective search space: 39931050
Effective search space used: 39931050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)