BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0020.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311987|ref|YP_003776079.1| acyl-CoA thioester hydrolase [H...   287   3e-79
gi|300313155|ref|YP_003777247.1| acyl-CoA hydrolase [Herbaspiril...    80   1e-16

>gi|300311987|ref|YP_003776079.1| acyl-CoA thioester hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  287 bits (735), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 133/157 (84%), Positives = 145/157 (92%)

Query: 1   MDMPSHQLTMTVLMTPDMANFSGNVHGGTILKFLDQVAYACASRYAGQYVVTLSVDQVMF 60
           MD+PSHQLTMTVLMTPDMANF+GNVHGGTILK LDQVAYAC SRYAGQYVVTLSVDQVMF
Sbjct: 1   MDLPSHQLTMTVLMTPDMANFAGNVHGGTILKLLDQVAYACGSRYAGQYVVTLSVDQVMF 60

Query: 61  RQPIHVGELVSFLASVNHTGTSSMEVGIKVVAENIRTQEVRHVNSCFFTMVAVDGERKPV 120
           RQPIHVGELV+FLASVNHTG SSME+GIKVVAENIRTQE RHVNSCFFTMVAVD +RKP+
Sbjct: 61  RQPIHVGELVTFLASVNHTGKSSMEIGIKVVAENIRTQETRHVNSCFFTMVAVDDQRKPI 120

Query: 121 AVPSLRPFTGEEKRRFEAAKLRKKLRAELSQRFEEAK 157
            VP LRPF+ EEKRRFEAA +RK LR EL++R++E K
Sbjct: 121 PVPPLRPFSQEEKRRFEAAVIRKSLRQELARRYDEVK 157


>gi|300313155|ref|YP_003777247.1| acyl-CoA hydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 144

 Score = 79.7 bits (195), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 4   PSHQLTMTVLMTPDMANFSGNVHGGTILKFLDQVAYACASRYAGQYVVTLSVDQVMFRQP 63
           P     + V+  P  AN  G+V GG I+  +D      A+R A   V T++V+  +F+ P
Sbjct: 10  PGKAPQLRVMPMPSDANVYGDVFGGWIMAQVDIAGSLPATRRANGRVATIAVNSFLFKNP 69

Query: 64  IHVGELVSFLASVNHTGTSSMEVGIKVVAENIRTQ-EVRHVNSCFFTMVAVDGERKPVAV 122
           + VG+L+SF A +   G +S+ V ++V AE  R Q E+  V     T VA D  RKP  +
Sbjct: 70  VFVGDLLSFYADIVKVGNTSITVNVEVYAERNRLQTEIVKVTEATLTYVATDENRKPRPL 129

Query: 123 PSLRP 127
           P L P
Sbjct: 130 PPLDP 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 432,928
Number of extensions: 15172
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)