BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0014.p
         (131 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...    97   4e-22
gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...    53   8e-09

>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score = 97.4 bits (241), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 68/110 (61%)

Query: 3   TLTINGKQHNVDLPDDTPILWTLRDQLGMTGTKFGCGMALCGACTVHLDGEPIRSCITPI 62
           T  +NG   ++D+  D P+L  LR+ L + G KFGCG+  CGACTV +DG   RSC+ P+
Sbjct: 8   TFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVIPL 67

Query: 63  SAAAGKKITTIEAIAEDKIGKSVQEAWMALGVPQCGYCQAGQIMSATALL 112
           +  A + +TT++ + +D     VQ+A++     QCGYC  G IM+  ALL
Sbjct: 68  AGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALL 117


>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 52.8 bits (125), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 4   LTINGKQHNVDLPDDT-PILWTLRDQLGMTGTKFGCGMALCGACTV---HLDGEP----- 54
               G+ H+V     T  +L  LR+ L  TGTK GC    CGACTV    L GE      
Sbjct: 10  FYFRGQTHSVAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQLALKT 69

Query: 55  IRSCITPISAAAGKKITTIEAIAE-DKIGKSVQEAWMALGVPQCGYCQAGQIMS 107
           + +CI  +    G+ + T+E + + D     VQ+A +     QCG+C  G +MS
Sbjct: 70  VNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMS 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 400,302
Number of extensions: 14495
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 56
Effective length of database: 1,264,745
Effective search space: 70825720
Effective search space used: 70825720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)