BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0012.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide de...    94   3e-20

>gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide
           dehydrogenase large subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 759

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 9/221 (4%)

Query: 76  IEAEYYLPHIAHATMEPPAAVARITGGKCEVWACVQAPQATRETVAGHLGLKQEDVTVNV 135
           IE  Y  P+  HA++ P  AVA        VW+  Q P   R  ++    L +  + V  
Sbjct: 339 IERTYVWPYQLHASIGPSCAVADWRPEGLTVWSGTQNPHVMRIDLSRLCDLDEGSIEVIR 398

Query: 136 TLLGGGFGRKSKPDFAAEAALLSKAMNGAPVKVTWTREDDIHHDYFHTVSVERLEAGLDA 195
               G +GR    D  A+AALLS+A+ G PV+V  TRE +   +      +  +  G+DA
Sbjct: 399 LEASGCYGRNCADDVVADAALLSRAV-GRPVRVQLTREQEHAWEPKGAAQLMDVCGGVDA 457

Query: 196 NGKVSAWLHRTTAPT----IASIFAAGAKGEAPFELAM---SAVNIPYAIPNMRVEAPEV 248
            G++S +  +T  P+    + ++   G     P  L M   +AV  PYA P+M+++  +V
Sbjct: 458 QGRLSHYRFQTRYPSNDAPVLALLLTGKIAPEPRVLEMGDRTAVP-PYAYPHMQIDCDDV 516

Query: 249 DAHTRIGWFRSVSNIPHAFAVQSFSAELAAAAKRDHRDYLL 289
               R GW R VS +P++FA + F  ELA  A  D   + L
Sbjct: 517 APIVRAGWLRGVSAMPNSFAHEVFIDELAELAGADRLAFRL 557


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,280,888
Number of extensions: 52336
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)