BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0010.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310664|ref|YP_003774756.1| xanthine/CO dehydrogenase matur...   323   1e-89

>gi|300310664|ref|YP_003774756.1| xanthine/CO dehydrogenase
           maturation protein [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  323 bits (827), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/301 (52%), Positives = 216/301 (71%), Gaps = 6/301 (1%)

Query: 1   VGSMMAIRGDGHVRGSVSGGCVEDDLIRRIQDGELDRTLPFGLTYGLTADEAHRFGLPCG 60
           VG+M+A+R DG + GSVSGGC+EDDLI  +Q   +    P  L YG+ AD+AHRFGLPCG
Sbjct: 38  VGAMLALRDDGALVGSVSGGCIEDDLIASVQRDGIVPQRPGRLVYGVDADQAHRFGLPCG 97

Query: 61  GTLEIMMEPVSAQSRIGELLTAVRQGLRVTRTLDLDTGAATIATDSEARQTVLQGRKLIA 120
           GTLE++ EP+SAQSRIGELL+ + +G  V R L L +G   + +        +    L+ 
Sbjct: 98  GTLELVTEPLSAQSRIGELLSMLAEGRLVHRRLCLRSGEVRLESAPAGSSLQVDAHALVT 157

Query: 121 PYGPRFRLIIIGAAQMSRYVAQFALALDYQVIVCDPREEYLQEWDIPGVELSGEMPDDLL 180
            +GPR+RL++IGA ++SR +   ALALD+QV VCDPR EYL +WD+ GVEL   MPDD +
Sbjct: 158 VHGPRYRLLVIGAGELSRILCAMALALDFQVTVCDPRSEYLDQWDLAGVELVRSMPDDTV 217

Query: 181 MRLQLDANSAVVTLTHDPKLDDMALIEALKSPAFYIGAIGSRTNNIKRRERLALFDISSA 240
             +Q DA SAV+ LTHDPKLDD+AL++ALK+PAFY+GA+GSR NN  RRERL LFD+++A
Sbjct: 218 DAMQPDACSAVLALTHDPKLDDLALMQALKTPAFYVGALGSRANNHARRERLRLFDLTAA 277

Query: 241 EIDKLHGPVGLFLGARTPPEIAIAILAEMTAIRNGVT------ISQTHAARTDPLPEASG 294
           ++  L GPVG+F+G++TP EIAI+++AE+ A+RNGV       + +  + R  P  E+SG
Sbjct: 278 QLQALRGPVGIFIGSKTPAEIAISVMAEIVAVRNGVLLPRVWGVEEAKSLRGAPAAESSG 337

Query: 295 N 295
           +
Sbjct: 338 S 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,806
Number of extensions: 38911
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)