BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0009.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310667|ref|YP_003774759.1| MobA-related protein [Herbaspir...   137   4e-34

>gi|300310667|ref|YP_003774759.1| MobA-related protein
           [Herbaspirillum seropedicae SmR1]
          Length = 205

 Score =  137 bits (346), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 115/187 (61%), Gaps = 7/187 (3%)

Query: 15  LLLAAGKGTRFDPAGTGNKLLAPLPGSDD---VVAVAAARAMLQVLPVLAVVSDVDSELG 71
           LLLAAG+G+RFD      KLL   P  D    +VA AAA A+L+V+PVLAVV      L 
Sbjct: 11  LLLAAGRGSRFD--AREEKLLQAFPHHDGRPGMVATAAAAALLEVMPVLAVVPG-PGALA 67

Query: 72  RRLADAGCELVGCDDADT-GMSASLMCGIRQAQDAAGWIIALADMPYVQAATHRGLLAAL 130
             L   GC +     A +  MSASL CG++ +  A+GW++ALADMP V  +T   L  AL
Sbjct: 68  EALRAQGCAVCMPAPASSREMSASLRCGVQHSAQASGWLVALADMPCVDLSTLCLLRDAL 127

Query: 131 KDGVQIAVPAYLGQRGNPVAFGRSHLDGLLALSGDRGARALLQQFPVNEIPVNDPGIHRD 190
             G  I  P   G+RG+PV FGR+HLD LLAL GD+GARALL+  PV E+ V D GI  D
Sbjct: 128 AAGAPIVAPVMQGRRGHPVGFGRAHLDALLALHGDQGARALLKTHPVTELEVMDEGIFAD 187

Query: 191 IDTRADL 197
           +DT  DL
Sbjct: 188 VDTAEDL 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 663,014
Number of extensions: 28857
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)