BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0003.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311990|ref|YP_003776082.1| malonyl CoA-[acyl-carrier-prote...   215   2e-57

>gi|300311990|ref|YP_003776082.1| malonyl CoA-[acyl-carrier-protein]
           transacylase [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  215 bits (548), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/183 (61%), Positives = 140/183 (76%)

Query: 9   PHQGLMSVGGVEAGEVEELLRRHGAFVAIVTGFDTLIAGGRSDDLLAAANELEGLGARTG 68
           P QGLM++GG++    ++ L RHGA VAIVTG DTLIAGG S  L A A EL G GART 
Sbjct: 132 PGQGLMALGGIDLAAAQDCLLRHGAHVAIVTGDDTLIAGGSSPALEAVAAELAGRGARTT 191

Query: 69  ILPVGIASHTPLMESALSPFTAALDALDFREPACAVLAGVSGLEIHDIPSARRTLAQQLT 128
           +LPVG+ASHTPLM++A++PF AAL+ L    P  A+LAGVSG  I D   A   L +QLT
Sbjct: 192 VLPVGLASHTPLMQAAVTPFAAALEGLSLHAPKTALLAGVSGQGIADAHQACALLLRQLT 251

Query: 129 HTIRWSSCMDACAERGVGVALELGPGSALSRMLRERHPHIECRSVSDFRSLAGVVNWLRS 188
             I+W++CMDAC ERGV VALELGPG+ALSRMLRERHPH+ CRS++DFRSL+G+++WLR 
Sbjct: 252 EPIQWAACMDACVERGVTVALELGPGAALSRMLRERHPHLSCRSLADFRSLSGLLSWLRR 311

Query: 189 RLD 191
           + D
Sbjct: 312 QAD 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 563,915
Number of extensions: 21336
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)