BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0002.p
         (132 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311991|ref|YP_003776083.1| triphosphoribosyl-dephospho-CoA...   127   2e-31

>gi|300311991|ref|YP_003776083.1| triphosphoribosyl-dephospho-CoA
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  127 bits (320), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 76/98 (77%)

Query: 16  SHGLRVAARHAVGGAREEGALGFPSVFEIALPQLQATLAAGRDWHCAKTDALFALMAHVS 75
           SHG  VA  HAVGGAREEGALGFP+VFE+ALPQLQ+TL  GR  H A+ DALFALMAH+S
Sbjct: 176 SHGQSVALAHAVGGAREEGALGFPAVFEVALPQLQSTLEQGRAPHEARIDALFALMAHIS 235

Query: 76  DTNVYHRGGAAGAALVQQRSRDFLAQGGGGLPDPRGXA 113
           DTNVYHRGGA GA  V+Q+S  FLA GG G P  R  A
Sbjct: 236 DTNVYHRGGAEGAQRVRQQSAAFLAAGGTGAPGWRTQA 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 383,366
Number of extensions: 12931
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 57
Effective length of database: 1,264,745
Effective search space: 72090465
Effective search space used: 72090465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)