BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0055.0019.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312593|ref|YP_003776685.1| aspartate-semialdehyde dehydrog...   407   e-115

>gi|300312593|ref|YP_003776685.1| aspartate-semialdehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  407 bits (1045), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/265 (80%), Positives = 215/265 (81%), Gaps = 47/265 (17%)

Query: 1   MKDDAVIVLDPVNDNVIRDALAKGVKNYIGGNCTNSILLMGVGGLFKEGLVEWVSSMTYQ 60
           MKDDAVIVLDPVN+NVI+DALAKGVKNYIGGNCTNSILLMGVGGLFKEGLVEWVSSMTYQ
Sbjct: 104 MKDDAVIVLDPVNNNVIKDALAKGVKNYIGGNCTNSILLMGVGGLFKEGLVEWVSSMTYQ 163

Query: 61  AASGGGANH-----------------------------------------------XPLA 73
           AASGGGANH                                                PLA
Sbjct: 164 AASGGGANHMRELLKGMGVINAAVADELATPSSAILDIDRKVAKTIREDVPTEFFGAPLA 223

Query: 74  GGLIPWIDAQLENGQSKEEWKGQAEVNKILGNEKPIPVDGLCVRIGAMRCHSLALTIKLK 133
           GGLIPWIDAQLENGQSKEEWKGQAEVNKILGNE+ IPVDGLCVRIGAMRCHSLALTIKLK
Sbjct: 224 GGLIPWIDAQLENGQSKEEWKGQAEVNKILGNEQIIPVDGLCVRIGAMRCHSLALTIKLK 283

Query: 134 RDLPLAEIESIIRAGNQWVKWVPNDRAITVKELTPASITGSLEIGVGRVRKLNQGPEYIS 193
           RDLPLAEIESIIRAGNQWVKWVPNDRAITVKELTPASITG LEIGVGRVRKLNQGPEYIS
Sbjct: 284 RDLPLAEIESIIRAGNQWVKWVPNDRAITVKELTPASITGGLEIGVGRVRKLNQGPEYIS 343

Query: 194 AFVIGDQLLWGAAEPLRRMLRIILG 218
           AFVIGDQLLWGAAEPLRRMLRIILG
Sbjct: 344 AFVIGDQLLWGAAEPLRRMLRIILG 368


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 750,457
Number of extensions: 32013
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)