BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0055.0011.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312598|ref|YP_003776690.1| chorismate synthase [Herbaspiri...   266   2e-72
gi|300312597|ref|YP_003776689.1| Zn-dependent protease with chap...   155   6e-39

>gi|300312598|ref|YP_003776690.1| chorismate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  266 bits (680), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 140/149 (93%)

Query: 3   GDIAIPFESWEHVRENPFFSANATIVPQLEDYMDALRKAGDSCGARIDVVAQNVPVGLGE 62
           G+IAIPFESWEHV  NPFF+ANA+I+ +LE YMDALRK GDS GARIDVVAQNVPVGLGE
Sbjct: 161 GEIAIPFESWEHVPNNPFFAANASIIERLEAYMDALRKDGDSIGARIDVVAQNVPVGLGE 220

Query: 63  PIYDKLDAEIAFALMGINAVKGVEIGAGFKSVAQKGTEHGDALTPDGFVGNNAGGILGGI 122
           P+YDKLDAEIAFALMGINAVKGVEIGAGF+SVAQKG+EHGDALTP+GFVGNNAGG+LGGI
Sbjct: 221 PLYDKLDAEIAFALMGINAVKGVEIGAGFRSVAQKGSEHGDALTPEGFVGNNAGGVLGGI 280

Query: 123 STGQDITASIAIKPTSSIRSPRPSIXSGG 151
           STGQDITASIAIKPTSSIR+PRPSI   G
Sbjct: 281 STGQDITASIAIKPTSSIRTPRPSIDKSG 309


>gi|300312597|ref|YP_003776689.1| Zn-dependent protease with
           chaperone function protein [Herbaspirillum seropedicae
           SmR1]
          Length = 273

 Score =  155 bits (391), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query: 203 CESVQTTQGGTVGVTRTQSMALSAQEIDSAAVKEYAQVLDEQRKKGALNQNAAQMRRVRA 262
           CE+VQTTQGG VG+ R Q M +S+ E+D+A+ KEYAQVL E + KG LN+NAAQ++RVR 
Sbjct: 22  CETVQTTQGGAVGIDRKQQMLVSSAEMDAASSKEYAQVLAEAKSKGLLNRNAAQVQRVRN 81

Query: 263 IADRLIPQTVVFRPDAAKWKWEVNVITSPEANAWCMPGGKIA 304
           IA RLIPQT VFRPDA KW WEVNV++S E NAWCMPGGKIA
Sbjct: 82  IASRLIPQTGVFRPDALKWNWEVNVLSSDETNAWCMPGGKIA 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 901,995
Number of extensions: 33904
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)