BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0055.0009.p
         (563 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312599|ref|YP_003776691.1| major facilitator superfamily p...   871   0.0  
gi|300311464|ref|YP_003775556.1| major facilitator superfamily p...    62   1e-10

>gi|300312599|ref|YP_003776691.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/520 (80%), Positives = 473/520 (90%), Gaps = 1/520 (0%)

Query: 1   LFILPFFLFSATAGQLADKMEKGRLARYVKLLEIGIMGIAAYGWMTHHLWLLVVAVAGMG 60
           LFILPFFLFSAT+GQLADK+EKGR+AR+VKLLEI IMGIAAYGWMTHHLWLLV AV GMG
Sbjct: 62  LFILPFFLFSATSGQLADKLEKGRVARFVKLLEIAIMGIAAYGWMTHHLWLLVAAVIGMG 121

Query: 61  VHSTIFGPVKYAYLPQQLKPQELVGGNGVIEMGTFVGILLGEVIGAVLVVHKPFGLEMVA 120
           VHST+FGPVKYAYLPQQL+ +EL+GGNG+IEMGTFVGILLGE++GAVLVVHKP+GL +VA
Sbjct: 122 VHSTLFGPVKYAYLPQQLRREELIGGNGLIEMGTFVGILLGEILGAVLVVHKPWGLHLVA 181

Query: 121 AITIGFAVLGWLASLGIPSSPAPAPDLKINWNPFSEMVRNLGFSRRNRPVFLSILGNSWF 180
            +TIG AVLGWLASL IP SPAP P+LK+NWNPF+E VRNL +SRRNRPVFLS+LGNSWF
Sbjct: 182 GMTIGIAVLGWLASLRIPLSPAPVPELKVNWNPFTETVRNLAYSRRNRPVFLSLLGNSWF 241

Query: 181 WFYGAIVLAQFPLYAKNYLHGDHSVFVLLLMVFSVGIGIGSLLCERLSGHKVEIGLVPFG 240
           WFYGAI+LAQFP+YAKNYLHGDHSVFVLLL VFSVGIG GSLLCERLSGHKVEIGLVPFG
Sbjct: 242 WFYGAIMLAQFPVYAKNYLHGDHSVFVLLLAVFSVGIGAGSLLCERLSGHKVEIGLVPFG 301

Query: 241 AIGLSVFGLELYFASVSY-SATAAVDMSGFLAQHGSLRILIDCAMIGVFGGLYIVPLFAL 299
           +IGLSVFGLELYFAS +Y + TA +D+ GFLAQ GS RILIDC  IGVFGGLYIVPLFAL
Sbjct: 302 SIGLSVFGLELYFASQAYVTPTAMLDLGGFLAQGGSWRILIDCLGIGVFGGLYIVPLFAL 361

Query: 300 IQTRCDPEHVSRTIAGMNIMNSLFMVVAALLAMVLLRSGFTIPQIFLITAILNALVATYI 359
           IQTRCDP HVSRTIAGMNIMN+LFMVV+AL+AMVLL++G +IPQIFL TAI+N +VA YI
Sbjct: 362 IQTRCDPAHVSRTIAGMNIMNALFMVVSALVAMVLLKAGLSIPQIFLATAIMNGVVAAYI 421

Query: 360 FSLVPEFLMRFLAWMLIHTIHRVRTVNADLIPKHGAAVLVCNHVSYVDAIVIMAASPRPI 419
           FSLVPEFL+RFLAW+LIHT +RVR +N   IP+ G AVLVCNHVSYVDAI IMAASPRP+
Sbjct: 422 FSLVPEFLIRFLAWILIHTFYRVRIINGQAIPEQGPAVLVCNHVSYVDAIAIMAASPRPV 481

Query: 420 RFVMDHRIFRTPVLSWIFRTAKAIPIAPAKEDPWLMEKAYVDIAQALHEGDLVCIFPEGK 479
           RFVMDH+IFR PV+SW+FR  +AIPIAP KEDPWL EKA+VDIAQALHEG+LVCIFPEGK
Sbjct: 482 RFVMDHQIFRIPVMSWLFRNVRAIPIAPVKEDPWLTEKAFVDIAQALHEGELVCIFPEGK 541

Query: 480 LTSNGEINEFKGGIKKIIDRSPVQVFPLALRGLWGSLLTR 519
           LT +GE+N FKGG++KII RSPV V P+ALRGLWGSL +R
Sbjct: 542 LTRDGELNPFKGGVQKIIARSPVPVLPMALRGLWGSLFSR 581


>gi|300311464|ref|YP_003775556.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 155/370 (41%), Gaps = 54/370 (14%)

Query: 2   FILPFFLFSATAGQLADKMEKGRLARYVKLLEIGIMGIAAYGWMTHHLWLLVVAVAGMGV 61
           F+L + L +A  G  AD   KG++     +++I  +G +   +  H L  L  AV G G 
Sbjct: 47  FVLSYVLLAAFVGAFADAFPKGKVMLITNMIKI--VGCSLMFFTVHPL--LAYAVVGFG- 101

Query: 62  HSTIFGPVKYAYLPQQLKPQELVGGNGVIEMGTFVGILLGEVIGAVLV------------ 109
            +  + P KY  L + L P++LV  NG IE  T   I++G V+G  LV            
Sbjct: 102 -AAAYSPAKYGILTELLPPEKLVAANGWIEGLTVGSIIMGTVLGGALVNPKISSVILSFD 160

Query: 110 ---VHKPFGLEMVAAITI--GFAVLGWLASLGIPSSPAPAPDLKINWNPFSEMVRNLG-F 163
              V  P      AA+ I     V+  L +  IP + A     +   NP   +V   G F
Sbjct: 161 FPLVDLPIDTPTEAALCIISLIYVIAALFNFNIPDTGARYEHQE--RNPIRLIVDFAGCF 218

Query: 164 SR--RNRPVFLSILGNSWFWFYGAIVLAQFPLYAKNYLHGDHSVFVLLLMVFSVGIGIGS 221
           +   +++   +S+   + FW  GA +      +A+  LH       +L  + +VG+ +G+
Sbjct: 219 TTLWKDKLGQISLAVTTLFWGAGATLQFIVLKWAEKSLHMPLDKAAILQGIVAVGVALGA 278

Query: 222 LLCERLSGHKVEIGLVPFGAIGLSVFGLELYFASVSYSATAAVDMSGFLAQHGSLRILID 281
           +   R    K  + ++P G     V G+ +   + + S   A  +               
Sbjct: 279 MAAARFVPLKKSLTVMPLGI----VMGIVVMLMTTTTSVWVAYPL--------------- 319

Query: 282 CAMIGVFGGLYIVPLFALIQTRCDPEHV----SRTIAGMNIMNSLFMVVAALLAMVLLRS 337
             ++G   G ++VP+ AL+Q R    HV      +IA  N   +L ++   +L   ++R 
Sbjct: 320 LVIVGALSGYFVVPMNALLQHR---GHVLMSAGHSIAVQNFNENLSVLTMLVLYAFMVRM 376

Query: 338 GFTIPQIFLI 347
              +  + +I
Sbjct: 377 NLDVNTVIII 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,807,237
Number of extensions: 79534
Number of successful extensions: 357
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 3
Length of query: 563
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 473
Effective length of database: 1,193,720
Effective search space: 564629560
Effective search space used: 564629560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 133 (55.8 bits)