BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0055.0005.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane p...   435   e-123

>gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  435 bits (1119), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/272 (79%), Positives = 249/272 (91%)

Query: 22  LKPMQGLSRTQLRDLFRFAAKRLSDDRLPQVAGSLTFTTILSLVPLLTIALAIFTAFPLF 81
           L  M+GL+R QL DL RFA +RL +DRLPQVAGSLTFTTILSLVP+LTIALA+FTAFPLF
Sbjct: 8   LSRMRGLTREQLSDLLRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLF 67

Query: 82  STFRSALEAYFVQSLMPKGVASTILGYLNQFSSKSARLSAVGGVALILTSVLTMATIDRV 141
           STFR++LEAYFV++LMPKGVA+TILGYLNQF++KSAR+SAVGGV LILTSVLTM+TI+ V
Sbjct: 68  STFRASLEAYFVENLMPKGVANTILGYLNQFAAKSARISAVGGVVLILTSVLTMSTIESV 127

Query: 142 FNQIWRVKKSRPLLQRILVYWAIITLGPLLIGISISVTSYLYSATNGVVTSVPLIGASFY 201
           FNQIWRVKKSRPL+QR+LVYWAIITLGPLLIG+SISVTSYL +AT G V S+P +GASFY
Sbjct: 128 FNQIWRVKKSRPLVQRVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASFY 187

Query: 202 TLVSVLLTTSAFTLLYIAVPNQWVDWRDAVWGGLLAGVGVEIAKRLFASYVMKFPTYTMV 261
           TLVS++ +T A+TLLY  VPNQ VDWRDA+ GGLLAG+G+EIAKRLFA Y++KFPTYTMV
Sbjct: 188 TLVSLMFSTLAYTLLYSTVPNQTVDWRDALAGGLLAGIGLEIAKRLFAVYILKFPTYTMV 247

Query: 262 YGTVAALPIFLLWIYMLWMITLVGALVTAALP 293
           YGTVA LPIFL+WIYM+WMITL GAL+TAALP
Sbjct: 248 YGTVAVLPIFLVWIYMMWMITLFGALLTAALP 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 843,704
Number of extensions: 30399
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)