BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0053.0006.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311613|ref|YP_003775705.1| sugar ABC transporter auxiliary...   189   5e-50

>gi|300311613|ref|YP_003775705.1| sugar ABC transporter auxiliary
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 130

 Score =  189 bits (481), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 111/130 (85%)

Query: 1   MKKTPLLNIALSQLIASLGHGDSIVIGDAGLPVPPGVPLIDLALTRGVPGFMDTLQTVLA 60
           MKKT LLN A+SQ+IA++GHGD++VIGD GLPVPPGVP+IDLA+TRGVPGF+  L+TVL+
Sbjct: 1   MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPVIDLAVTRGVPGFLTVLETVLS 60

Query: 61  EMHVEHHVLADELAQRSPQLAQQVGLLGLAGKQTLPHEEFKRRTQQARAVIRTGEFTPYA 120
           E+ VE HV+ADELAQ SP LA Q+  L LAGK+++ HE FK +T++ARAVIRTGE TPYA
Sbjct: 61  ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHESFKEQTRRARAVIRTGECTPYA 120

Query: 121 NIILISGVTF 130
           NIIL SGV F
Sbjct: 121 NIILGSGVVF 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 369,753
Number of extensions: 13233
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)