BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0051.0020.p (160 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 219 1e-58 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 92 3e-20 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 87 4e-19 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 83 8e-18 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 79 2e-16 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 219 bits (557), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 105/130 (80%), Positives = 120/130 (92%) Query: 19 PDRDIALELCSLGKVYALKRGMFKAPGEIRAVNDVSLRLYRGETLGLVGESGCGKSTLAK 78 P DIALELC+L KVY LKRG+F+ PG+++AVNDVSLRLYRGETLGLVGESGCGKSTLAK Sbjct: 10 PLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAK 69 Query: 79 MLLGLLEPSSGNVLINGQEVDPTLRKDNARHIQPIFQDPYSSLNPRKTVSEIVGLPLRLH 138 MLLGLL P+SGNVLINGQEVDPT RK +ARHIQPIFQDPYSSLNPRKTV+EIVGLPL+LH Sbjct: 70 MLLGLLPPTSGNVLINGQEVDPTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLH 129 Query: 139 RVGSSADRQK 148 +G++A+R + Sbjct: 130 GIGNAAERNR 139 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 91.7 bits (226), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 3/98 (3%) Query: 38 RGMFKAPGEIRAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPSSGNVLINGQE 97 RG + P A++ V L++ GE +GLVGESGCGKSTL ++ GLL+PS G VL+NG++ Sbjct: 33 RGWSRPPAITHALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNGRD 92 Query: 98 VDPTLRKDNAR---HIQPIFQDPYSSLNPRKTVSEIVG 132 ++ A +Q IFQ+PY+SLNPR + +IVG Sbjct: 93 RASLSSREEAEARLQVQMIFQNPYASLNPRLRIDQIVG 130 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 87.4 bits (215), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/120 (45%), Positives = 76/120 (63%), Gaps = 7/120 (5%) Query: 34 YALKRGMFKAPGEIRAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPS-SGNVL 92 Y +K+G F A AV+ V L+L RGETLG+VGESG GKSTL LL L S +G++ Sbjct: 278 YHIKQGWF-AKRAFHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIR 336 Query: 93 INGQEVDP----TLRKDNARHIQPIFQDPYSSLNPRKTVSEIVGLPLRLHRVGSSADRQK 148 +G + LR +R +Q +FQDP++SL+PR+TV +IVG L LH SA++Q+ Sbjct: 337 FDGVPISERPQRELRPLRSR-MQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQR 395 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 83.2 bits (204), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 16/148 (10%) Query: 7 GVAPTAPP-PDT-----QPDRDIA------LELCSLGKVYALKRGMF-KAPGEIRAVNDV 53 G+AP A PD Q +IA L++ L + +K G+F + + AV V Sbjct: 283 GIAPQAEARPDLIASELQAQAEIAAQRQPILKVRDLTTRFDVKSGIFGRVRQRVHAVEKV 342 Query: 54 SLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPSSGNVLINGQEVDPTLR---KDNARHI 110 S LY GETL +VGESGCGKST + LL L++ + G V G+++ R + R I Sbjct: 343 SFDLYAGETLAIVGESGCGKSTTGRSLLRLVDIAGGKVEFGGRDLAQLPRSELRQLRRDI 402 Query: 111 QPIFQDPYSSLNPRKTVSEIVGLPLRLH 138 Q IFQDP++SL+PR TV + P+ +H Sbjct: 403 QFIFQDPFASLDPRMTVGYSIMEPMLVH 430 Score = 63.5 bits (153), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 14/107 (13%) Query: 47 IRAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPSSGNVLI--------NGQEV 98 + AV D+S + +GETL +VGESG GKS + ++ L+E G + +GQ + Sbjct: 24 VDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRL 83 Query: 99 D------PTLRKDNARHIQPIFQDPYSSLNPRKTVSEIVGLPLRLHR 139 D T+R I IFQ+P +SLNP TV E + +RLH+ Sbjct: 84 DLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQ 130 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 67/98 (68%), Gaps = 4/98 (4%) Query: 44 PGEIRAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPSSGNVLINGQEVDPTLR 103 PG +R ++D++L + RG T+G++GESG GK+TLA+ + G++ P+ G++ ++G+ + PTL Sbjct: 327 PG-VRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLDGETLSPTLE 385 Query: 104 ---KDNARHIQPIFQDPYSSLNPRKTVSEIVGLPLRLH 138 ++ R +Q +FQ+ ++LNP ++ I+ PL + Sbjct: 386 GRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFY 423 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 480,937 Number of extensions: 19027 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 35 Length of query: 160 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 82 Effective length of database: 1,250,540 Effective search space: 102544280 Effective search space used: 102544280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)