BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0051.0018.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312475|ref|YP_003776567.1| metal-dependent amidase/aminoac...   436   e-124
gi|300310472|ref|YP_003774564.1| hippurate hydrolase [Herbaspiri...   223   1e-59
gi|300310161|ref|YP_003774253.1| aminohydrolase [Herbaspirillum ...   221   4e-59

>gi|300312475|ref|YP_003776567.1| metal-dependent
           amidase/aminoacylase/carboxypeptidase [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  436 bits (1122), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 201/252 (79%), Positives = 234/252 (92%)

Query: 8   GFNSGAEQMLRDGLFERFPCDAIFGMHNHPGVATGTFMFRAGAFMAACDTVKIKIIGKGS 67
           GF+SGA++ML DGLFERFPC+A+FG+HNHPGV  GTFMFR+G FMAACDTVKI+I G+GS
Sbjct: 146 GFDSGAQKMLADGLFERFPCEAVFGIHNHPGVEAGTFMFRSGPFMAACDTVKIRITGRGS 205

Query: 68  HAARPHLSVDPLVAASSLVMALQTVVSRNVDPMETAVVTVGSLHAGHAANVIPEHAAMEL 127
           HAARPHLSVDP+V A+SLVMALQTVVSRN+DPM++AVVTVGSLHAG A+NVIPE A MEL
Sbjct: 206 HAARPHLSVDPVVVAASLVMALQTVVSRNIDPMDSAVVTVGSLHAGKASNVIPEFATMEL 265

Query: 128 SVRSFKPEVRELLEQRIRALVLSHAESYGARAEIEYIRGYPVLINSEAETEFARQIAEEL 187
           SVRSFKPEVRELLEQRIRALV +HA+SYGA+AEI+Y+RGYPVL+NS+AET+FAR +AEEL
Sbjct: 266 SVRSFKPEVRELLEQRIRALVSTHAQSYGAQAEIDYLRGYPVLVNSDAETDFARSVAEEL 325

Query: 188 VGADKIIAPFGPIAGSEDFAYFLQQRPGCFVRVGNGAGQPMLHNAHYDFNDDNVTVGAAY 247
           VG +K+IAPFGPIAGSEDFAYFL+QRPGCF+RVGNG G+PMLHNA YDFND N+ +GAAY
Sbjct: 326 VGPEKVIAPFGPIAGSEDFAYFLRQRPGCFLRVGNGQGKPMLHNAGYDFNDANIPIGAAY 385

Query: 248 WTRLVERYLQAQ 259
           WTRLVER++  Q
Sbjct: 386 WTRLVERWMPLQ 397


>gi|300310472|ref|YP_003774564.1| hippurate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  223 bits (569), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 105/250 (42%), Positives = 157/250 (62%), Gaps = 3/250 (1%)

Query: 10  NSGAEQMLRDGLFERFPCDAIFGMHNHPGVATGTFMFRAGAFMAACDTVKIKIIGKGSHA 69
            +GA +M+ DGLFE+FP +A+FGMHN PG+  G F  R G  MAA   +KI I GKG+HA
Sbjct: 142 GAGARKMIDDGLFEQFPTEAVFGMHNWPGLPAGQFGLRPGPIMAAGSRLKITITGKGAHA 201

Query: 70  ARPHLSVDPLVAASSLVMALQTVVSRNVDPMETAVVTVGSLHAGHAANVIPEHAAMELSV 129
           A+PHL +DP+  A S+V+  QT+ +R+ DP++ AV++V   HAG   NVIP+ A +  ++
Sbjct: 202 AQPHLGLDPIPLACSMVLQCQTIAARHKDPVDPAVISVCMFHAGDTDNVIPDRAELRGTI 261

Query: 130 RSFKPEVRELLEQRIRALVLSHAESYGARAEIEYIRGYPVLINSEAETEFARQIAEELVG 189
           R+    +++ L++ IR +  + AE+YGA+ E+E+ + YP  IN+ AET+F  ++  +  G
Sbjct: 262 RTLSSTLQQKLQEDIRRMCHALAEAYGAKVEVEFFQYYPATINTPAETDFCERVIRQTFG 321

Query: 190 ADKIIAPFGPIAGSEDFAYFLQQRPGCFVRVGNGA---GQPMLHNAHYDFNDDNVTVGAA 246
            D+I         SEDF + L++RPG +V +GN         LH+ HYDFNDD +  G  
Sbjct: 322 DDRIRTGIPANMTSEDFGFMLEERPGAYVLIGNAPQDRASHSLHHPHYDFNDDIIEAGVR 381

Query: 247 YWTRLVERYL 256
           YW  L + Y 
Sbjct: 382 YWVALAQGYF 391


>gi|300310161|ref|YP_003774253.1| aminohydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 402

 Score =  221 bits (563), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 157/257 (61%), Gaps = 11/257 (4%)

Query: 11  SGAEQMLRDGLFERFPCDAIFGMHNHPGVATGTFMFRAGAFMAACDTVKIKIIGKGSHAA 70
           +GA  M+ DGLFERFP DAIFG+HN PG+  G+F  R G  MA+ +T    + G+G+H A
Sbjct: 142 AGARLMIEDGLFERFPADAIFGVHNWPGLPAGSFGLRPGPLMASSNTFSATLFGRGAHGA 201

Query: 71  RPHLSVDPLVAASSLVMALQTVVSRNVDPMETAVVTVGSLHAGHAANVIPEHAAMELSVR 130
           +PH S+DP++AA+ L +A Q++V+RN++P   AV++V  LH G A NVIPE A +  +VR
Sbjct: 202 QPHRSIDPVLAAAQLTLAWQSIVTRNINPNHRAVISVTQLHTGTADNVIPEQATLSGTVR 261

Query: 131 SFKPEVRELLEQRIRALVLSHAESYGARAEIEYIRGYPVLINSEAETEFARQIAEELVGA 190
           SF  E  +L+E R+ A+  +  + +  R +  + R YP ++N    T+ A Q     VGA
Sbjct: 262 SFDAETLDLIEHRMAAIAEAIGQMFDLRVQFHFERLYPAVVNHPEATQQAMQAMMAAVGA 321

Query: 191 DKIIAPFGPIAGSEDFAYFLQQRPGCFVRVGNG-----------AGQPMLHNAHYDFNDD 239
           +++     P   SEDFA++LQ +PGC+  +GNG           A    LH+  YDFNDD
Sbjct: 322 EQVDGDTEPAFASEDFAFYLQHKPGCYAFLGNGVIADGKQAGSQATSRELHSPFYDFNDD 381

Query: 240 NVTVGAAYWTRLVERYL 256
            +  G AYW  LV +YL
Sbjct: 382 IIDAGVAYWVSLVRQYL 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 828,284
Number of extensions: 34694
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 3
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)