BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0051.0017.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra...    93   5e-21
gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sen...    80   4e-17
gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro...    77   2e-16
gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra...    76   6e-16
gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro...    74   2e-15

>gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 515

 Score = 92.8 bits (229), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 71/86 (82%)

Query: 1   VEQAGATMSKVVGSVQSANTLVREINSASQEQAAGIKEVNQAISQMDGVTQQNAALVEQA 60
           VEQAG TM +VVGSVQ A+TLV EI++AS++QA GI +VNQA+ QMDGVTQQNAALVEQA
Sbjct: 430 VEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQQNAALVEQA 489

Query: 61  AAAAHSLEDQARNLKQLVTVFKLKPA 86
           AAAA SLEDQA  LK+ V  F L+ A
Sbjct: 490 AAAAKSLEDQAAQLKRAVAFFSLQAA 515


>gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis
           sensory transducer protein [Herbaspirillum seropedicae
           SmR1]
          Length = 539

 Score = 79.7 bits (195), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%)

Query: 1   VEQAGATMSKVVGSVQSANTLVREINSASQEQAAGIKEVNQAISQMDGVTQQNAALVEQA 60
           V+QAG TM ++V SV    TL+ EI  AS+EQ+ GI E+N A++QMD  TQQNAALVEQA
Sbjct: 450 VDQAGQTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNAALVEQA 509

Query: 61  AAAAHSLEDQARNLKQLVTVFKLKPAAH 88
           AAAAHSL DQ R L  LV  F+L+  AH
Sbjct: 510 AAAAHSLRDQTRQLAALVARFRLRGMAH 537


>gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 563

 Score = 77.4 bits (189), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 72/89 (80%), Gaps = 1/89 (1%)

Query: 1   VEQAGATMSKVVGSVQSANTLVREINSASQEQAAGIKEVNQAISQMDGVTQQNAALVEQA 60
           VEQAG+TM  +V S++    ++ EIN A++EQ++GI++VN+AI Q+D +TQQNAALVEQA
Sbjct: 438 VEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQA 497

Query: 61  AAAAHSLEDQARNLKQLVTVFKLKPA-AH 88
           AAAA SL++QA  L+QLV+VF+L  A AH
Sbjct: 498 AAAARSLQEQAAGLQQLVSVFRLDAAQAH 526


>gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 581

 Score = 75.9 bits (185), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 70/87 (80%)

Query: 1   VEQAGATMSKVVGSVQSANTLVREINSASQEQAAGIKEVNQAISQMDGVTQQNAALVEQA 60
           V QAGATM +VV SV+S   +V EI++AS EQ++GI+E+N+A++QMD  TQQNAALVEQA
Sbjct: 434 VAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQA 493

Query: 61  AAAAHSLEDQARNLKQLVTVFKLKPAA 87
           AAAA S+++QA  L Q +++FKL+  A
Sbjct: 494 AAAAKSMQEQAVRLTQSISIFKLEQGA 520


>gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis
           protein I [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 71/84 (84%)

Query: 1   VEQAGATMSKVVGSVQSANTLVREINSASQEQAAGIKEVNQAISQMDGVTQQNAALVEQA 60
           VE+AGATMS+VV SV+    +V EI++AS EQ+ GI+E+N+AI+QMD VTQQNAALVE+A
Sbjct: 432 VERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNAALVEEA 491

Query: 61  AAAAHSLEDQARNLKQLVTVFKLK 84
           AAAA SL+DQA  L Q+V+VFKL+
Sbjct: 492 AAAAQSLQDQAARLSQVVSVFKLQ 515


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.306    0.116    0.285 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 144,728
Number of extensions: 2746
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 61
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 61
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 123 (52.0 bits)