BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0051.0004.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312672|ref|YP_003776764.1| TetR family transcription regul...    86   1e-18

>gi|300312672|ref|YP_003776764.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score = 86.3 bits (212), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 3   APTLSRDEVVQRILAE-FRRSGYQGATLASLSEATGLGKSSLYHYFPNGKADMGEAALQA 61
           A  ++  E V  +LAE FR  G++GA+LA +SE T LG+ S+YH+FP GK +M +A L  
Sbjct: 2   ARVIAEKEDVIPLLAEVFRTYGFEGASLARISEGTKLGRGSIYHFFPGGKEEMAQAVLGH 61

Query: 62  VGIWLGENVLPALSEPGSPEKRLKKFSAGLSEFYAKGSKPCLTDLFTIGEAGELYQQYLK 121
           V  W   +V  +L+E    E  +K     +S ++  G + CL  +F +G   + +   ++
Sbjct: 62  VDAWFRRHVFESLAEHEDAEAGIKAMFDDVSRYFLSGQRVCLVGVFALGNERDRFAVMVR 121

Query: 122 QRLGGLIKALAA 133
                 I ALA+
Sbjct: 122 DYFTAWIDALAS 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 592,322
Number of extensions: 23198
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)