BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0007.p
         (486 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase [Her...   463   e-131

>gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score =  463 bits (1191), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/456 (56%), Positives = 315/456 (69%), Gaps = 22/456 (4%)

Query: 36  AFPVIAVAYSGGLDSSVLLHLAADERGIRLFAFHIXARERG--IRLFAFHIHHGISANAD 93
           A   +AVAYSGGLDS+VLL +AA             ARE G   RL   H+HHG+S +AD
Sbjct: 9   AHDTLAVAYSGGLDSTVLLWVAAQ-----------WARENGGTSRLAPLHVHHGLSPHAD 57

Query: 94  QWQTHCRAQSERVGAGFDTRNVTLATKDKSGVEEAARVARYQALGQLCREHGAGLLLTAH 153
            W  H +A   ++G    +  V L     SGVEEAAR+ARY ALG+LCR+ GA +LLTAH
Sbjct: 58  AWLAHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAH 117

Query: 154 HLDDQAETVLLQMLRGSGVAGISGMDGANVAAELLGDANLLMARPLLGASRGELEQYARQ 213
           HLDDQAETVLLQ+LRGSG+AG+SGMD  N A  LLGD  LLMARP LG +R +LE  A  
Sbjct: 118 HLDDQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADA 177

Query: 214 EQVAYVEDESNSDTRYARNALRHKVMPVLAEFFPGFQERFARAAGHAQAAQRLLTVLADQ 273
             + ++EDESNSD RY RNALRH+VMP L + FPG+Q+R ARAAGHAQ AQ LL  +A+Q
Sbjct: 178 MSLKWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQ 237

Query: 274 DIAACLEGEYLSVPALRRLDSERIDNLLRHWLGLRGLRMPSSAWLFELRTQLLDAKYDAQ 333
           D+A C E E+L +P LR L  +R  NL+RHW GLRG+RMPS+AW+ E+R QLL A  +AQ
Sbjct: 238 DLAHCREDEHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQ 297

Query: 334 LCVTHPDCHVRRYRDRVFLTPRRPPFDENTGPQPFTWRGEEKLHFPQFSGSLFFEV---- 389
           LCV+HPD  V RYR+RVFL PRR P DE        W G+ +   P + G+L F+     
Sbjct: 298 LCVSHPDGEVHRYRERVFLAPRRMPPDEGA-VATLRWDGQAQWRLPAWYGTLHFDRIGGD 356

Query: 390 -SDIGFNAAWLREQALSVCLRSGGERVRLAWNRPAKSLKYHFQNMDIPAWERPYLPLVFA 448
            +  GF+ AWL+ Q+L  C RSGGER+RLA NRPA+SLK  +Q+ D+PAWERPYLPLV+A
Sbjct: 357 DARPGFDPAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWA 416

Query: 449 QEQILYAAGIGMDCHAQPKPGEESDERRIALRWQAD 484
            E +L+AAGIGMDC  Q  P   +  +RIALRWQ D
Sbjct: 417 GESLLFAAGIGMDC-GQFAP--SATAQRIALRWQPD 449


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,480,281
Number of extensions: 59840
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,198,455
Effective search space: 475786635
Effective search space used: 475786635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)