BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0004.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311194|ref|YP_003775286.1| signal peptide protein [Herbasp...   233   2e-62

>gi|300311194|ref|YP_003775286.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 539

 Score =  233 bits (593), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 130/151 (86%), Gaps = 5/151 (3%)

Query: 7   HTYRNALRGILSKTVILSGLIAAIYPA-----QASEVSDISKLMRSGQYADALIKTDAVL 61
           H  R+ +     KT ++S L+AA++ A      ASE+SDI+KLMR+GQYA+AL KTDAVL
Sbjct: 12  HGLRDLISKTAHKTAVMSSLVAALFAAPASLAHASEMSDINKLMRAGQYAEALTKTDAVL 71

Query: 62  AKHPRDAQMRFVKGLILAEQNKSAEAIAIFSKLTEDFPDLPEPYNNLAVLYAANGQYDKA 121
           AKHPRDAQ+RF KGLILAEQN+SAEAIA+F+KLTEDFPDLPEPYNNLAVLYAA+GQYDKA
Sbjct: 72  AKHPRDAQLRFTKGLILAEQNRSAEAIAVFTKLTEDFPDLPEPYNNLAVLYAADGQYDKA 131

Query: 122 RTTLDMAIRTNPTYATALENLGDIYAKLASR 152
           R  LDMA+RTNPTYATALENLGD+YAKLAS+
Sbjct: 132 RAALDMAMRTNPTYATALENLGDVYAKLASQ 162



 Score =  188 bits (478), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 87/122 (71%), Positives = 101/122 (82%)

Query: 174 KASESAREEKDKTAVLAAVNNWAKAWSDMDVKSYLAAYGSDFQTPKGESRKEWADERRAR 233
           KA E A  E+DKTAVLAA+N WAKAWSD DV+ YL  Y SDF TPKG SRKEWA+ERRAR
Sbjct: 418 KAKEQASAEQDKTAVLAALNGWAKAWSDKDVRGYLGHYASDFDTPKGASRKEWAEERRAR 477

Query: 234 IEEKGHITVKVETPQIAIKNDTATVRFRQIYNSNRLTVNSRKTLILTKQGNKWLIKQERT 293
           IE+KG I+VKV    ++I  +TATVR+RQIYNS+RLTV+SRKTLI  KQGN+WLIKQER+
Sbjct: 478 IEDKGRISVKVSNATVSINGNTATVRYRQIYNSDRLTVDSRKTLIFVKQGNRWLIKQERS 537

Query: 294 GG 295
           GG
Sbjct: 538 GG 539


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.126    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 749,217
Number of extensions: 25323
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)