BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0003.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868...   375   e-105

>gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  375 bits (963), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/359 (56%), Positives = 240/359 (66%), Gaps = 57/359 (15%)

Query: 1   LLIEIYKDLGNNRLQEAQAKADALVAAYPHFRLGHLVRGDLLMMHARPVRGFGAMADAPA 60
           LLI+IYKDLG NRL+EAQAKADALVAAYP FRLGHLVRGDLL+MHARPVR FGAMAD PA
Sbjct: 38  LLIDIYKDLGANRLREAQAKADALVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPA 97

Query: 61  DKLKDLRAEAMVRIKSLQERPNPNLIPKPVLQVGDDQKNVLVVDTSRSRMYVYENQGGQL 120
           DKLK+LR EAMVRI+SLQE+P+PNLIP          K VL V   +  + V +      
Sbjct: 98  DKLKELRDEAMVRIRSLQEKPDPNLIP----------KAVLQVGEDQKNVLVVDT----- 142

Query: 121 RFITDYYISQGRYGVNKSREGDQRALGLFDLGLVFAGVHADQDLAEGDRFAGAHQHLLDL 180
                   ++ R  V +++ G+ +                D  +++G RF        D 
Sbjct: 143 --------TRSRMYVYENQGGELK-------------FQTDFYISQG-RFGANKSKSGDQ 180

Query: 181 AADLGLDRDLIERAQGARQRQHLAQRFDXNARIPGPKLPDFYGTGALPLNYPNEWDKRNG 240
              +G+                    +  N RIPGPKLPDFYGTGALPL+YPNEWDKRNG
Sbjct: 181 RTPIGV--------------------YYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNG 220

Query: 241 RSGSGIWLHGTPSDNFSRPPLSSDGCVVLANPDLQSLYSTAEVGKTVVVISDGIQFVNKS 300
           RSG GIWLHGTPSDNFSRPPLSSDGCVVLANPDLQSLYSTAEVGKTVVVIS  +QFV+K+
Sbjct: 221 RSGYGIWLHGTPSDNFSRPPLSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVDKN 280

Query: 301 EWDKERGSAGKFMDQWQQDMEAADADKVLANYSPAFRSNLGESLSTWFSRQQKXQGHAR 359
           EW ++R +A   ++QW Q +E AD +KVL+ YSP FRS  GESL+TWF RQQK    AR
Sbjct: 281 EWARQRDAASAILEQWGQSLENADPEKVLSYYSPEFRSAQGESLATWFGRQQKSLNGAR 339


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,143,479
Number of extensions: 49168
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)