BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0002.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311190|ref|YP_003775282.1| UDP-2,3-diacylglucosamine hydro...   358   e-100
gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans isome...   150   2e-37
gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans isome...   131   1e-31

>gi|300311190|ref|YP_003775282.1| UDP-2,3-diacylglucosamine
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  358 bits (920), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/235 (74%), Positives = 191/235 (81%)

Query: 87  PRTTQAFFDFLAEHAAFTQQLYLLGDIFEYWAGDDDLETPYNRTIADALRQLSERGVQLF 146
           PRTT AF  FL  HAA TQQLYLLGDIFEYWAGDDDL TPYN+ IADAL+ L  +GVQL+
Sbjct: 28  PRTTAAFLAFLQSHAAQTQQLYLLGDIFEYWAGDDDLATPYNQFIADALKALQAQGVQLY 87

Query: 147 WIAGNRDFLAGPAFAEAAGLTILGDPHVIHLAGRTIALAHGDAQCTDDTAYMAFRAQVRQ 206
           W+AGNRDFL G AFA+AAGLT+L DPHVI  AGR + LAHGDAQCTDD AYMAFRAQVRQ
Sbjct: 88  WMAGNRDFLVGQAFADAAGLTLLQDPHVITAAGRRLTLAHGDAQCTDDHAYMAFRAQVRQ 147

Query: 207 PAWQQQFLAMPLAQRKAIIEGVRQNSKDANKEKSNEIMDVNADAIAALYDSTGTQVLIHG 266
           PA+QQQFLAMPLAQRKAIIEG+R+NS+DAN+ K   IMDVNA AI  L+  TGT  LIHG
Sbjct: 148 PAYQQQFLAMPLAQRKAIIEGIRKNSQDANQSKEMAIMDVNAGAIDTLFAQTGTDTLIHG 207

Query: 267 HTHRPALHAVPANGQTRLRYVLPDWEYDVEAARGGWISLTADGVLHRFDAAGVEI 321
           HTHRPALH +      +LRYVLPDWEYDVE  RGGWISLTADG LHR D  G EI
Sbjct: 208 HTHRPALHRLGEGPAGKLRYVLPDWEYDVETPRGGWISLTADGALHRHDVNGDEI 262


>gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 76/89 (85%)

Query: 1   MREKPTDAPIRNEAKNGLKNEAYTIAMARTSNPHSAAAQFFINVNNNQPLDYPSRDGWGY 60
           +REKPTDAPI+NEA NGLKNE YTIAMARTS PHSA AQFFINV NN+ LDYP +DGWGY
Sbjct: 90  LREKPTDAPIKNEANNGLKNEVYTIAMARTSAPHSATAQFFINVANNRFLDYPGQDGWGY 149

Query: 61  AVFGKVVQGADVVDKIKQVRTGSSGXPRT 89
           AVFGKVV G +VVDKIKQVRTG+   P T
Sbjct: 150 AVFGKVVAGTEVVDKIKQVRTGAGDVPST 178


>gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 70/85 (82%)

Query: 1   MREKPTDAPIRNEAKNGLKNEAYTIAMARTSNPHSAAAQFFINVNNNQPLDYPSRDGWGY 60
           M++K T  PI NEAKNGLKNE YT+AMART+ PHSA+AQFFINV NN  LDYP +DGWGY
Sbjct: 60  MKQKETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGY 119

Query: 61  AVFGKVVQGADVVDKIKQVRTGSSG 85
            VFGKVV+G +VVDKIK V+T  +G
Sbjct: 120 CVFGKVVEGTEVVDKIKGVKTTRAG 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,088,434
Number of extensions: 47153
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)