BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0045.p
         (84 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310890|ref|YP_003774982.1| cysteine desulfurase [Herbaspir...    89   5e-20
gi|300312137|ref|YP_003776229.1| cysteine desulfurase NifS [Herb...    88   1e-19
gi|300312444|ref|YP_003776536.1| cysteine desulfurase [Herbaspir...    87   2e-19

>gi|300310890|ref|YP_003774982.1| cysteine desulfurase
          [Herbaspirillum seropedicae SmR1]
          Length = 408

 Score = 89.4 bits (220), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 46/56 (82%)

Query: 18 LQFPIYLDYSATTPVDPLVATRMVAYLTEKFGNPASSSHSFGWEAKAAVEKARKQV 73
          L+FPIYLDY ATTPVDP VA  M  +LT+KFGN ASSSH FGWEA+ AVE+AR QV
Sbjct: 13 LRFPIYLDYGATTPVDPQVARVMCDFLTDKFGNAASSSHPFGWEARRAVEQARAQV 68


>gi|300312137|ref|YP_003776229.1| cysteine desulfurase NifS
          [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 88.2 bits (217), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 46/56 (82%)

Query: 18 LQFPIYLDYSATTPVDPLVATRMVAYLTEKFGNPASSSHSFGWEAKAAVEKARKQV 73
          L  PIYLDYSATTPVDP VA +M+ YLT+  GNPAS SHSFGW A+AAVE AR+QV
Sbjct: 5  LSLPIYLDYSATTPVDPRVAQKMIPYLTDIPGNPASRSHSFGWAAEAAVEHAREQV 60


>gi|300312444|ref|YP_003776536.1| cysteine desulfurase
          [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score = 87.4 bits (215), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 46/55 (83%)

Query: 19 QFPIYLDYSATTPVDPLVATRMVAYLTEKFGNPASSSHSFGWEAKAAVEKARKQV 73
           FPIY+DYSATTPVDP VA +M+ YL E+FGNPAS SH +GW A+ AVE+AR++V
Sbjct: 17 HFPIYMDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEAREEV 71


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.126    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 248,642
Number of extensions: 7807
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 3
Length of query: 84
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 30
Effective length of database: 1,364,180
Effective search space: 40925400
Effective search space used: 40925400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)