BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0038.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasm...   278   5e-76
gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasm...    58   8e-10

>gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  278 bits (710), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 150/169 (88%)

Query: 65  GIGAGKVLKSMVLAGRAPEVTQLNGVIFGEWADLGLLLELDNVSAQGNWQKLLFPTVWSL 124
           G+GA KVLKSMVLA RAPEVTQLNGV+FGEWADLGLLLELDNV+ QGNW+K +FPTVWSL
Sbjct: 93  GMGAAKVLKSMVLANRAPEVTQLNGVVFGEWADLGLLLELDNVAVQGNWEKQMFPTVWSL 152

Query: 125 LNNHGHVVAAPLGIHRINNLYYNIAVFNRLGLSVPRSWDEFDKVAARLKQAGVVPLAQSS 184
           LNNHGHVVAAPLGIHRIN+LYYN+AVF R  LS P++WDEFD++  +L+ +GVVPLAQS+
Sbjct: 153 LNNHGHVVAAPLGIHRINSLYYNVAVFKRYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSA 212

Query: 185 ESWQVATLFETLVLSEGGPAYYRQLFVDLSPRAFTDARLLRALQRLRGL 233
           E+WQ+ATLFE L L+E GPAYYR+LFV++SP A+ DAR+L  L+RLR L
Sbjct: 213 EAWQLATLFENLALAESGPAYYRKLFVEMSPAAYLDARMLHILKRLRAL 261


>gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 57.8 bits (138), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 77  LAGRAPEVTQL-NGVIFGEWADLGLLLELDNVSAQGNWQKLLFPTVWSLLNNHGHVVAAP 135
           L+ +AP++    NG     +A  GLL ++     +  W    + +     + HG   + P
Sbjct: 78  LSTQAPDIINWHNGERMAFYASRGLLEDVSEDWKKNGWDAT-YASTKEASSWHGKQYSVP 136

Query: 136 LGIHRINNLYYNIAVFNRLGLS-VPRSWDEFDKVAARLKQAGVVPLAQSS-ESWQVATLF 193
             ++    ++Y   +F ++G++  P++WDEF     +LK AG+ P+A    ++W +A  F
Sbjct: 137 T-VYYSWGMFYRKDLFKKVGIAGEPKTWDEFLDACKKLKAAGIAPIAVGGRDAWTLAGWF 195

Query: 194 ETLVLSEGGPAYYRQLFV-DLSPRAFTDARLLRALQRLRGLXPRRH 238
           + L L   G A+++QL   D+   A+TDAR+ +     + L   ++
Sbjct: 196 DYLDLRINGNAFHQQLMAGDI---AYTDARVKKVHTAWKSLIDNKY 238


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 789,241
Number of extensions: 29365
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)