BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0037.p
         (418 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313832|ref|YP_003777924.1| sugar ABC transporter periplasm...   470   e-133

>gi|300313832|ref|YP_003777924.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score =  470 bits (1209), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 219/269 (81%), Positives = 239/269 (88%), Gaps = 4/269 (1%)

Query: 1   MESFPASAKVAWQTDDGKDTFCMPIASVMHGFLYNQKIFKELNLQPPKTEAEFLKLLETV 60
           ME F  +AK AWQTDDG+DTFCMP+ASV+HGF YN KIFKELNL+PPKTEAEF KLL+TV
Sbjct: 134 MEFFAPAAKAAWQTDDGRDTFCMPMASVIHGFFYNTKIFKELNLEPPKTEAEFFKLLDTV 193

Query: 61  KAGGKYTPLVLGTADQWEAHQVLFTGVGPNYWKGEAGRKALIAGKAKFTDPQFLNVWEYE 120
           KA GKY PLV+GTA+QWE+HQVLFT +GPNYWKGE GRKALIAGKAKFTDPQF+  W YE
Sbjct: 194 KANGKYAPLVMGTAEQWESHQVLFTSIGPNYWKGEEGRKALIAGKAKFTDPQFVAAWNYE 253

Query: 121 AKLGKYLSKGASAQTYGDSQNMFALGQGAVYAAGSWDIAYFNANASSKLELGVFPPPVPK 180
           AKLGKYL KGASAQTY DSQNMFALG+GAVY AGSWDIAYFN     K++   FPPPVPK
Sbjct: 254 AKLGKYLPKGASAQTYSDSQNMFALGKGAVYPAGSWDIAYFNG----KMDFAAFPPPVPK 309

Query: 181 AGDSCYISDHNDIGMGVNKKSKNKEDAYKFLAWLGSQEFADIYTNKVTGFFSLSNHLISV 240
            GD+CYISDHNDIGMG+NKKSKNKEDAYKFLAWLGSQEFAD+YTNKVTGFFSLSNHLISV
Sbjct: 310 NGDACYISDHNDIGMGINKKSKNKEDAYKFLAWLGSQEFADLYTNKVTGFFSLSNHLISV 369

Query: 241 KDPIAKQMIDWRKSCSSTIRVNSQIXGGG 269
           KDPIAKQM+ WRK+C+STIRVNSQI   G
Sbjct: 370 KDPIAKQMMGWRKNCASTIRVNSQILNRG 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,324,457
Number of extensions: 52198
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,203,190
Effective search space: 397052700
Effective search space used: 397052700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)