BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0035.p
         (137 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease ...   253   5e-69

>gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  253 bits (645), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 124/137 (90%), Positives = 132/137 (96%)

Query: 1   VWQYIGIPMMLIYAALLAVPEEVLEAAHAEGAGALRIFWQIKLPLIWPTLGLVTILTFVA 60
           VWQY+GIPMMLIYAALLAVPEEVLEAAHAEGA A+RIFWQIKLPLI+PTLGLVTILTFVA
Sbjct: 168 VWQYVGIPMMLIYAALLAVPEEVLEAAHAEGASAMRIFWQIKLPLIYPTLGLVTILTFVA 227

Query: 61  NFNAFDLIYSVKGALAGPNYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAG 120
           NFNAFDLIYSVKGALAGPNY+SDLLGT+FYRTFFGYQAQ+GSPTMGAAVATLMFLVIL G
Sbjct: 228 NFNAFDLIYSVKGALAGPNYASDLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILGG 287

Query: 121 VGTYFYLVQRKLTRYEL 137
           VG YF LVQR+LTRY +
Sbjct: 288 VGAYFVLVQRRLTRYAM 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 386,961
Number of extensions: 14283
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,260,010
Effective search space: 76860610
Effective search space used: 76860610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)