BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0033.p (369 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 580 e-167 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 399 e-112 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 382 e-107 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 351 5e-98 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 347 7e-97 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 580 bits (1496), Expect = e-167, Method: Compositional matrix adjust. Identities = 285/368 (77%), Positives = 318/368 (86%) Query: 1 LKKSYDGKQNVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDIV 60 L+K+YDG+ +VLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLE+ISGGELAIGG +V Sbjct: 9 LRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGELAIGGQVV 68 Query: 61 NHLPPAKRGIAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLL 120 NHLPPA+RGIAMVFQSYALYPHMNVYKNMAFGLK+AG++K+DID RIRHAA ILKIDHLL Sbjct: 69 NHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAAILKIDHLL 128 Query: 121 ERLPRELSGGQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLAATI 180 +RLPRELSGGQRQRVAIGRAIVR+PRLFLFDEPLSNLDAALRVQTRLEIAKLH+QLAATI Sbjct: 129 QRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKLHRQLAATI 188 Query: 181 VYVTHDQVEAMTLGDKIVVMHDGHIQQAGTPLELYQHPQNLFVAGFIGSPKMNFLPGVVT 240 VYVTHDQVEAMTLGDKIVVMH+G IQQAGTPLELYQ PQNLFVAGFIGSPKMNF GVVT Sbjct: 189 VYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKMNFFQGVVT 248 Query: 241 AVAEDGLEVAVSGGHKVRVDVVPGKAGVGDKVTLGLRAEHIHENTAGSEQFSGQVNLVEH 300 + G++V ++GG ++ DV P G VTLGLRAE I E + G VNLVEH Sbjct: 249 RCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDGQPLHGVVNLVEH 308 Query: 301 LGEANFIYVTLSGGQDIVVRGDGNRNVGIGETIELSADTNVFHVFDSDGNALRRLKPGNV 360 LGEANF+YVTL GG DIVVRGDGNRNV IG+ I LS ++ FH+FD+ G ALRR PGN+ Sbjct: 309 LGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQGQALRRRTPGNL 368 Query: 361 LSSRQQVQ 368 ++R+ Q Sbjct: 369 QAARRHGQ 376 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/357 (57%), Positives = 256/357 (71%), Gaps = 5/357 (1%) Query: 1 LKKSYDGKQNVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDIV 60 L K YD + V+ +NL+I DGEF V VGPSGCGKSTLLRM+ GLE+IS G+L IG + Sbjct: 9 LAKRYDDNE-VMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDIGARRM 67 Query: 61 NHLPPAKRGIAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLL 120 N +P +KRG+AMVFQSYALYPHM++Y NMAFGLKIAG +KA+ID ++HAA IL IDHLL Sbjct: 68 NEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKILHIDHLL 127 Query: 121 ERLPRELSGGQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLAATI 180 +R PR LSGGQRQRVAIGRAI R+P +FLFDEPLSNLDAALRV+ RLE AKLH L T+ Sbjct: 128 DRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTM 187 Query: 181 VYVTHDQVEAMTLGDKIVVMHDGHIQQAGTPLELYQHPQNLFVAGFIGSPKMNFLPGVVT 240 +YVTHDQ+EAMTL DKIVV+ +G I+Q G+P +LY HP N FVAGFIGSPKMNF+ G V Sbjct: 188 IYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMNFIDGTVA 247 Query: 241 AVAEDGLEVAVSGGHKVRVDVVPGKAGVGDKVTLGLRAEHIHENTA-GSEQFSGQVNLVE 299 A+ DG++V + GG V VG KVTLG+R EH+ N A G + +E Sbjct: 248 AIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHL--NIAQGQAALQARCTALE 305 Query: 300 HLGEANFIYVTLSGGQD-IVVRGDGNRNVGIGETIELSADTNVFHVFDSDGNALRRL 355 LG+ +++Y G +D +++R + + G + L+AD H+F +DG AL RL Sbjct: 306 LLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLFGADGQALPRL 362 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/363 (52%), Positives = 255/363 (70%), Gaps = 8/363 (2%) Query: 2 KKSYDGKQNVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDIVN 61 +K+Y V+ ++LDI + EFCV +GPSGCGKSTLLR + GLED++ G+L IGG VN Sbjct: 10 QKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLFIGGKRVN 69 Query: 62 HLPPAKRGIAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLLE 121 +P A+R +AMVFQSYAL+PHM VY+NM+FGL +A KA+I++++R AA IL+++ LL+ Sbjct: 70 DVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQ 129 Query: 122 RLPRELSGGQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLA-ATI 180 R P+ELSGGQRQRVAIGRAIVR+P +FLFDEPLSNLDA LR QTR+EIA+LH+Q A++ Sbjct: 130 RKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARLHRQFEQASV 189 Query: 181 VYVTHDQVEAMTLGDKIVVMHD-------GHIQQAGTPLELYQHPQNLFVAGFIGSPKMN 233 VYVTHDQVEAMTL D+IV++H G I Q GTP+ELY HP+N FVAGFIGSP+MN Sbjct: 190 VYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVAGFIGSPRMN 249 Query: 234 FLPGVVTAVAEDGLEVAVSGGHKVRVDVVPGKAGVGDKVTLGLRAEHIHENTAGSEQFSG 293 FLP V V E+G+ V +SG + + G G VT+G+R EH+ + G Sbjct: 250 FLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIGSQGQYGIHR 309 Query: 294 QVNLVEHLGEANFIYVTLSGGQDIVVRGDGNRNVGIGETIELSADTNVFHVFDSDGNALR 353 +V LVE LGE ++++ GQ +V + G+ + GE + ++ ++FD DG AL Sbjct: 310 EVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVAIAPACAYLFDQDGLALT 369 Query: 354 RLK 356 R + Sbjct: 370 RTQ 372 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 351 bits (901), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 185/354 (52%), Positives = 241/354 (68%), Gaps = 15/354 (4%) Query: 1 LKKSYDGKQNVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDIV 60 +KK + G ++ G+++DI DGEF VLVGPSGCGKSTLLRML GLE+I+GGE+ IGG +V Sbjct: 9 VKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIGGTVV 67 Query: 61 NHLPPAKRGIAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLL 120 N++ P R IAMVFQ+YALYPHM V NMAF L +A +KA +DER++ AA IL ++ LL Sbjct: 68 NNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILGLNQLL 127 Query: 121 ERLPRELSGGQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLAATI 180 +R PR+LSGGQRQRVA+GRAIVR P++FLFDEPLSNLDA LRVQ R EI +LH++L T Sbjct: 128 DRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQRLKTTS 187 Query: 181 VYVTHDQVEAMTLGDKIVVMHDGHIQQAGTPLELYQHPQNLFVAGFIGSPKMNFLPGVVT 240 +YVTHDQ+EAMT+ D+IVVM DG ++Q G PL+LY +P NLFVAGFIGSP MNF+P + Sbjct: 188 IYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMNFIPATLR 247 Query: 241 AVAEDGLEVAVSGGHKVRVDVVPGKAGV------GDKVTLGLRAEHIHENTAGSEQFSGQ 294 A G EV + G + VP G G KVT G+R EH+ AG + + + Sbjct: 248 RNAT-GAEVEFADGTR-----VPAPYGAALQGNDGQKVTYGVRPEHLSIGAAG-QGIATK 300 Query: 295 VNLVEHLGEANFIYVTLSGGQDIVVRGDGNRNVGIGETIELSADTNVFHVFDSD 348 V +VE G ++ G + + G G+ I L D + H+FD++ Sbjct: 301 VIVVEPTGADTEVFSRF-GDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAE 353 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 347 bits (891), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 187/340 (55%), Positives = 232/340 (68%), Gaps = 7/340 (2%) Query: 10 NVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDIVNHLPPAKRG 69 +V+ G++ +I DGEF V+VGPSGCGKSTLLRM+ GLE+IS G++ IG +VN L P +R Sbjct: 21 DVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSGQIVIGDRVVNDLEPKERD 80 Query: 70 IAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLLERLPRELSG 129 IAMVFQ+YALYPHM VY+NMA+GLKI G +K++ID R++ AA IL++ LLER PR+LSG Sbjct: 81 IAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAAAILELGALLERTPRQLSG 140 Query: 130 GQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLAATIVYVTHDQVE 189 GQRQRVA+GRAIVRKP +FLFDEPLSNLDA LRVQ RLEI KLH L T +YVTHDQVE Sbjct: 141 GQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQKLHASLRTTSLYVTHDQVE 200 Query: 190 AMTLGDKIVVMHDGHIQQAGTPLELYQHPQNLFVAGFIGSPKMNFLPGVVTAVAEDGLEV 249 AMTLG +++VM+ G +Q GTP E+Y P FVA FIGSP MN L G ++A DG Sbjct: 201 AMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSPPMNLLQGKLSA---DGASF 257 Query: 250 AVSGGHKVRVDVVPG--KAGVGDKVTLGLRAEHIHENTAGS-EQFSGQVNLVEHLGEANF 306 VS G+ + +P G + LG+R EH+ GS Q S +V LVE LG A Sbjct: 258 EVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAAQLSLEVELVEALG-AEL 316 Query: 307 IYVTLSGGQDIVVRGDGNRNVGIGETIELSADTNVFHVFD 346 + GGQ +V+R N V G+ I S H FD Sbjct: 317 LVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFD 356 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,207,128 Number of extensions: 53897 Number of successful extensions: 583 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 366 Number of HSP's successfully gapped: 144 Length of query: 369 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 282 Effective length of database: 1,207,925 Effective search space: 340634850 Effective search space used: 340634850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)